Gene detail

Detailed information of Bpl_scaf_56904-5.28 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56904-5.28	FLAP ENDONUCLEASE FAMILY MEMBER	Bpl_scaf_56904	542427	560938	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_56904-5.28

ATGTTTATTACTGTATGAAGTATTTAGAGTATATGTTGAAGAATAATCTCAAGCCAATTATGGTCTTTGATGGCTGTCATCTTCCTTCAAAGAAAGCTGTCGAGAAAAACAGGAGAGAGAAGAGAGACATGTACAGAAAGAAGGCAGCCCAATTGTTAAGGGAAGGAAATAGAGCAGAAGCCAGGGAATGTCTACAAAGGTGTATTGATATCAGTCCAGAGATGGCTCTCAGACTTATGGAGGTAATTTTTAAGATGGATCATTTTGGCAATGGAATGATGATAGAGAAAAGTCGACTGAATGAAGTTCTAGAAATTCAAAATGGATTCTACACGTTTGAGAAATTCAGATACATGTGTATTTTGTCAGGGTGCGATTATCTCCCCTCCTTATCAGGAATAGGATTAGCAAAAGCTTGTAAAGTATTTAAATTAGCCAGACAAACAGATCTAAAAGTACTATTAAAGAAGTTTCCTACAACCTATTTAAAGATGTCATTGACAGTGACTGATGATTATATAAATGGATTTATCAAGGCAAATAATACATTTCTTTACCAACTTGTATTTGATCCATTGTCAAGAAAACTGGTTCCCCTCAATGATTATGATGATGATATAGAACCAGATGATTTGGCATATGCTGGATCAATACGTCCAAAATTGTACTTGACAGAGACACAAAACAGACCAAATCTTCAAGGGAAGGAAGTTATTATAAAAAGCAAAATAGTTAAAACAGAAACCATCATTAAACCTGTTGAAGATTGTAAAGAAGTTAAATCTGATGTTGAACTGTCTGGTATTTATCTCGACTCGCCAAGAAAAACACAAAAATCATTGAAAAGACGACAGGATATCAGTAGCAGTGATGAAGAGTTGTCTCCCCCTAAAAAATATCAAAAGTTTATAAAATCACCACGGAAACCAGAATTCTTTGATTCATTAGTGGAAGCAGATAATAATGAAAGTCCAAAAGATGATAAAGAAAATGACATCAAGTCTCCAAGAAACAGATTTGCTGTTCTCAGCCCTTCAAAGAAACCCAAGTTTAATTTGAATGCTCCCAAAGAAGTTGTTAAGAGCAGTATTAAAATTGAAGACAAGGATACTCCTGTAGAAACTTCAAAAGATAATTCAGTAGTTGAACAAAAAACAAATTCATTGAAGACAGTAAATAAATTAGAAATGATGACTGCAACTAAAAAAGAATTTCCTAGACATAAATCTGATCCAGTTAAACCTTCACCAAAATCTGCATTCTCTTGGTCCAAATTTAAATCAACAAAACATACAAGTAATGTTGAATCTAGTCCGTGTTCCAGAAATCCTTTCAAACGTGTGGTATCTGATACAAATATTACATCATATATACAGTCAGCAAGTTCAATATCTAGGACAGAATCACAAAATAGTTTAGACACTTTAAGTCAAGTCAGTTCTCATAGTAACTTATATAGTATTGACCCAGACTGTTTACCAAATATGGATGATGTTGATGAATGTTGTCATGGTGATTCCGATATACAAACTGAAAATGGCAGCAGTAACACAAGACTTATAGCTAATGATAAAATAGATGAGAAAGTTAATACACAAGAAATAGATGATGAGGAAGAGCATGATATTATAATAGTAAAAAGTCAACCAGGAACCAGTTATGTGGATTTAAATTTGAAAGAGAAAAGTATCCAAAAAGCTCCCTTAATGTCTGGATGCCGTGTTTCTGGATTATCTCGTGGAAAGAAGAAATCTGCAACTATAGATATAAAACAACAAAATCTCAAAGATATGTTCTCCAAGTTTTCTAATAATAATAAAAAAACTTTACCAAAGCTCAAACATGAGAACAACGATTGTCTCGGTGCAACACCCTCTACAGACAATAATGTTTTAAGTACCGGTATAAAAGGTGGAATTCAGCGATGTTTACTTCCATGACAATACTGTTTTAAGTGTAAAAGGTGGTATTCAGCAATGTTTACTTCCAAGACATTCCATAGATATCTACTTGTTAAAATAAGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR037315	Domain	Exonuclease-1, H3TH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0035312	Molecular Function	5'-3' DNA exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10746	EXO1; exonuclease 1	EC:3.1.-.-	Mismatch repair	ko03430	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56904-5.28 global RNA-seq network