Gene detail

Detailed information of Bpl_scaf_56849-1.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56849-1.15	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2	Bpl_scaf_56849	146686	169662	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_56849-1.15

ATGATTTCAAGGACAAGGGTGAGGGAGGCAATTCGTGAAGACAATGAAGGATCCCTACAGACAAGTATTGATGATATTGTACACAAAGCTAAGCGTAGAAGATTGTTGGAGAAGATTGTCAACGTCAGACTGGGGATGATGAGGCATCTTTTCCTCATCCTTGACATGTCAGAATCTATGAAAGATCAAGATCTGAAACCTACCAGACTAATATCAACACTAAAGTTATTGGAACATTTTGTAGAAGAATACTTTGATCAGAATCCTATCAGTCAGCTAGGAATAATAGGAACCAGAAATAAACGAGCAGAAATAATTGCAGAATTGGGAGGAAATCCAAGAAGACACATTTCTACATTACAAAGTTTAGCTACAACAAATTGTCAGGGTGAACCATCTTTACAGAACTCTTTAGAAGTAGCAAGAAATACGTTGAGAAATATGCCTGGACATGCCAGTCGTGAAGTGCTGATTATATTTGGAAGTTTGACAACCTGTGATCCTGGTAATGTTATAGAAACAATTCAGTCAATGAAAGACACTAATGTGAGATGCTCTGTGATTGGTTTAGCTGCAGAAATCAGGGTCTGTAAAAAGCTTTGCATCGATACTAATGGTATTTACAATGTAATATTAGACGAAACTCATTTTAAAGATTTACTGATTCAACATGTTGATCCACCACCTGCTACGGCTAACACAGAGGCCTCATTAATCAGAATGGGTTTCCCTCATCATTTATTGGGAGGTTCTAAAGATAAAGAAGAAATGCCCTCCATGTGTATGTGCCATCTTGACAGTAAAATCAATGAGGGATTTGGAGGGAGCGGTTATTTTTGTCCACAATGTAAAAGTAAATATTGTGAACTTCCTGTGGAATGTAAAGCATGTGGTCTAACATTGGTGTCCGCTCCACATTTAGCCAGATCATATCATCATTTATTTCCCTTAGATGCTTTTAAAGAAATACCAACAGACAGCAACACTGTGTTTGATGATATAATATGTTATTCATGTAGAGTGTGTATGAAGAAACAAAGTGTATACATGTGTGAGAAATGTCAGCAGATTTTTTGTGTGGATTGTGACTTGTTTATACATGAGACACTTCATTCATGTCCAGGATGTGCTAGTTCAAGGGCCACCCAACAAATGTCAAAGGTCATTTGATAGTAGGCAGACACAGACAGTATGGTTAAATATAGATATGATAGATCTGAGACCACCATGTTATTGGGAACACATGTGCTAAATTTTGAGGCATATTGACTTATTTTAGTCATAAACAAAGTGTTCATTGGTGTTTCTAACAAAATAGGCCTGTGTCATACCATTTTGGGCAGAATTGGGAAATGTGTTAAAGCATGCTAAATGTAGATCATCCTAACTTGCTTGTAACCCAATTGTTTCTCATAAATAGGTTATGACATAAAACATCTAAATCAGTGTAATTTTTGCTCAGAAAGTAGGTCATGTCAGCATATTTTCAAACAAGATTATGATATAAAGCTAATAGAATTACATGCACAATTTAAAATAGTTTTAAATTAATTTGTTACTTGTCAGTGCGTTCTTTGAACCGATGGAGTATGCTGTTGTTCCACCACCATCACCATGGGTAAGCCATGGCTGATCATACTCCAATGCTCTCCACTCACCAATTCATTTGAAAACTTGTTTCAGATTTTTTCCTTAACTGATTTGTATTTAATAGTTTCCATGACAACACAGAATTTGTTATTAGCCAAATTGAAAAGACTATGGAACAGCCAATATGACTCTTCGATATAGCATTCTTTGTCGATAACCCACAGGCAATTGAAATCTGTTTGTCCTAATTAAAGTTAATTTACAAGGAAATTCTTTTTTTTTCAAAAGAAATTGAAGTTGTGATTTGATTGGTTGTGTACAAATTGTGTTGGAACTAATCATAATATTTACTGAAAGATGATGAGTGTAGAGAGGTTCTGAGTGTGATCAGCCATGGGTTGCATATGATGTGACACATTCTTGCTTCTGTGAGATTACGTAGAAAATTACATTAACAAATTATGATTCTAAGCTGTTATATTTGTTATGTTTGAAATAAAATGAAATTGATATACATATATATGATATGTTTTTCTGACCTCTCCAGTTGACACAATAATATTTATTGTCTGATCAGAATGTGAAACCCTCAATCTAATTAAAATCTGCTGTCATAATACACCACACTCCACCCAATAACATCTGACAGACCCTGTTATGATGAACTTTCTTATATGAATACTTATTTGATCAAAATCAACCAATCAGAGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04056	Ssl1	Ssl1-like	Family	Interproscan
PF07975	C1_4	TFIIH C1-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR004595	Domain	TFIIH C1-like domain	Interproscan
IPR007198	Domain	Ssl1-like	Interproscan
IPR012170	Family	TFIIH subunit Ssl1/p44	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR046349	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12695	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000439	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0005675	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03142	TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2	-	Basal transcription factors	ko03022	PMID: 28812709
			Nucleotide excision repair	ko03420	PMID: 28812709
			Viral carcinogenesis	ko05203	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56849-1.15 global RNA-seq network