| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_56375-1.4 | INTEGRIN ALPHA | Bpl_scaf_56375 | 71449 | 120534 | - |
| CDS | |||||
| Bpl_scaf_56375-1.4 | |||||
| Transcript |
| Bpl_scaf_56375-1.4 |
| Protein |
| Bpl_scaf_56375-1.4 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01839 | FG-GAP | FG-GAP repeat | Repeat | Interproscan |
| PF20805 | Integrin_A_Ig_2 | Integrin alpha Ig-like domain 2 | Domain | Interproscan |
| PF20806 | Integrin_A_Ig_3 | Integrin alpha Ig-like domain 3 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000413 | Family | Integrin alpha chain | Interproscan |
| IPR013517 | Repeat | FG-GAP repeat | Interproscan |
| IPR013519 | Repeat | Integrin alpha beta-propellor | Interproscan |
| IPR018184 | Conserved_site | Integrin alpha chain, C-terminal cytoplasmic region, conserved site | Interproscan |
| IPR028994 | Homologous_superfamily | Integrin alpha, N-terminal | Interproscan |
| IPR032695 | Homologous_superfamily | Integrin domain superfamily | Interproscan |
| IPR048285 | Domain | Integrin alpha, second immunoglobulin-like domain | Interproscan |
| IPR048286 | Domain | Integrin alpha, third immunoglobulin-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23220 | INTEGRIN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005178 | Molecular Function | integrin binding | Interproscan |
| GO:0007155 | Biological Process | cell adhesion | Interproscan |
| GO:0007160 | Biological Process | cell-matrix adhesion | Interproscan |
| GO:0007229 | Biological Process | integrin-mediated signaling pathway | Interproscan |
| GO:0008305 | Cellular Component | integrin complex | Interproscan |
| GO:0009897 | Cellular Component | external side of plasma membrane | Interproscan |
| GO:0033627 | Biological Process | cell adhesion mediated by integrin | Interproscan |
| GO:0098609 | Biological Process | cell-cell adhesion | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K06481 | ITGA2, CD49b; integrin alpha 2 | - | PI3K-Akt signaling pathway | ko04151 | PMID: 28812709 |
| ECM-receptor interaction | ko04512 | PMID: 28812709 | |||
| Phagosome | ko04145 | PMID: 28812709 | |||
| Focal adhesion | ko04510 | PMID: 28812709 | |||
| Regulation of actin cytoskeleton | ko04810 | PMID: 28812709 | |||
| Hematopoietic cell lineage | ko04640 | PMID: 28812709 | |||
| Platelet activation | ko04611 | PMID: 28812709 | |||
| Pathways in cancer | ko05200 | PMID: 28812709 | |||
| Proteoglycans in cancer | ko05205 | PMID: 28812709 | |||
| Small cell lung cancer | ko05222 | PMID: 28812709 | |||
| Hypertrophic cardiomyopathy (HCM) | ko05410 | PMID: 28812709 | |||
| Arrhythmogenic right ventricular cardiomyopathy (ARVC) | ko05412 | PMID: 28812709 | |||
| Dilated cardiomyopathy (DCM) | ko05414 | PMID: 28812709 | |||
| Human papillomavirus infection | ko05165 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_56375-1.4 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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