| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_56354-8.10 | U6 SNRNA-ASSOCIATED PROTEIN | Bpl_scaf_56354 | 876296 | 888704 | - |
| CDS | |||||
| Bpl_scaf_56354-8.10 | |||||
| Transcript |
| Bpl_scaf_56354-8.10 |
| Protein |
| Bpl_scaf_56354-8.10 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01423 | LSM | LSM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001163 | Domain | Sm domain, eukaryotic/archaea-type | Interproscan |
| IPR010920 | Homologous_superfamily | LSM domain superfamily | Interproscan |
| IPR033871 | Domain | Sm-like protein LSm5 | Interproscan |
| IPR047575 | Domain | Sm domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR20971 | U6 SNRNA-ASSOCIATED PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005688 | Cellular Component | U6 snRNP | Interproscan |
| GO:0046540 | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| GO:1990726 | Cellular Component | Lsm1-7-Pat1 complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12624 | LSM5; U6 snRNA-associated Sm-like protein LSm5 | - | Spliceosome | ko03040 | PMID: 28812709 |
| RNA degradation | ko03018 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_56354-8.10 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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