Gene detail

Detailed information of Bpl_scaf_56339-9.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56339-9.8	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Bpl_scaf_56339	938759	973726	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_56339-9.8

ATGGTTTTGCAGGACGAAACTTCATCAGATCCATTTTCTACAGCCACTAGCCCCTCCAGAGGATCCAGGGGTAGAAGAAGTAGTCGGGGAGATCCTTTAACTTCCAGTCCAGGAAGAGATTTACCCCCCTTTGAAGATGAAAGTGAGATGGATCAAAATGCTGTTGTGGAAGAAGAAGATGGAGAAGAACTATTTGGAGACAATTTAGAACAAGATTATCGTCCAATTCCTGCCTTAGACATTTACGATCAGGAGGGTCTAGATGAAGGGGACTACTCTGACATATCTGAAACCCACCGCGCAGCAGCAGAAAGAGAGATACGTCAAAGGGAAAGAGAGGAAGGTCGTCATGCTGGCCGCATGAGAAGAGGGTTATTGTATGAAGATTCAGACGAGGAAGATGAAGCTCCAAGGAAACGTCGACGAGCAGAGAGGGCTGCTGAAGGGGATGTTGAAGATGAGGAGATGATTGAAAGCATAGAGAACTTGGAAGATATGAAAGGTCATTCTGTTAGGGAGTGGGTTTCAATGTTAGGACCCAAAACAGAAATTAAGAACAGATTTAAAAACTTCCTACGTACATTTGTGGACCAAAAAGGTCACAACATTTATAGAGAAAAGATCAGACAAATGGTTGAAGCCAACAAAGAAAGTCTGATAATAGATTATAACATGTTAGCATCTGTAGAACAAGTTTTAGCTTACTTCTTACCTGAGGCTCCAGCAGAAATGTTACAGAATTTTGATGAGGCAGGAACAGAGGTAGTGATGAGTATGTATCCTAACTATGAAAAAATAGTAAAAACAATTCACGTCAGGGTGGCTGAACTTCCACTGATTGAAGAATTAAGATCATTAAGACAGTTACATCTGAACCAATTGATTCGTACCAGTGGTGTTGTAACCAGTTCTACAGGCGTTATGCCCCAGCTAAATGTCATTAAATATGATTGTAATAAATGTAACTATATCCTTGGACCTTTCTACCAATCACAGAGTCAGGAAATGAAACCAGGTTCTTGTCCTGAATGTCAGTCAACCGGGCCCTTTGAAATAAACATGGAACAGACATTATATAAAAATTATCAAAGAATTGCAATGCAAGAGAGTCCAGGAAAGGTACCTGCTGGTAGATTACCACGCTCTAAAGATGCCATATTACTGGATGACTTAGTAGACATGTGTAAACCTGGAGATGAAATTGAATTGACAGGAATATACCACAACAATTACGATGGTTCATTGAACACACAGAATGGATTCCCAGTGTTTGCTACAGTAATTCAGGCTAATTTTATAACAAAGAAAGATGACAAATTAGCTGCTGCAAATCTAACTGATGAAGATATCAAAGCTGTTGTACAGTTATCTAAAGATGAAAGGATAGGGGAAAGAATATTTGCCAGCATTGCCCCTTCTATATATGGTCATGAGGAAATTAAGAGAGCGATCGGTCTTGCTATATTTGGTGGAGAACCCAAAAATCCTGGAGGCAAACATAAAGTGAGGGGAGATATAAACATTCTATGTTGTGGCGATCCAGGAACAGCCAAATCACAATTTCTCAAGTATGTAGAAAAGACAGCTCCACGTGTGGTCTTCACAACTGGACAAGGAGCATCAGCTGTGGGATTGACAGCATATGTACAAAAGAATCCTGTGTCAAGAGAATGGACACTGGAAGCTGGAGCTTTGGTGCTAGCTGATAGAGGAATCTGTTTAATTGATGAGTTTGACAAGATGAATGATTCTGACCGAACCAGTATACATGAAGCCATGGAACAGCAAAGTATTTCAATTTCTAAAGCTGGTATTGTTACCTCCCTTCATGCTCGTTGCTGTATAATAGCTGCTGCTAATCCTATTGGTGGAAGATATGACCCCTCATTGACCTTTGCTGAAAATGTAGATTTAACAGAACCAATTTTGTCCAGATTTGATGTCCTTTGTGTAGTTAGAGACACAGTTGATCCTGTTCAGAACACACTGAACACTACTTCCTCAGTAGAACCTTTACCTCAGGATTTACTCAAGAAATATATTATTTATTGTAAAGACAAAGTCCACCCCAAACTTCACCAAATGGACCAGGACAAAGTTGCTAAGATGTACTCTGAACTCAGAAGGGAATCTATGGCCACAGGCAGTATACCTATAACAGTGAGACACATAGAGTCCATGATTCGTCTGGCTGAAGCTCATGGCAAGATGCACTTAAGAGATTATGTCAATGAAGACGATGTCAATATGGCTATGAGAATCATGTTGGAGAGCTTCATCAGTACACAAAAATTCAGTATCACAAGAACGATGAGAAAGACATTTAGCAGATACCTCACATACAAAAAGGACAACAATGAATTGTTGTTATTTATTCTTAAACAACTTGCTATGGACCAGATGTCATTCCAAAGGAACAGATTTGGCCTGGATCAAGAGACGATAGAAATCTCAGAAAAAGATTTAGCTGATAAGGCTAGACAAATCAACATTAGCAATCTCACATCATTCTACGAGAGTGACATATTTAGAGCAAACAGATTTAACCACGACAGAAAAAGAAAATTGATCATACAGACTGTTTGA

Transcript

Bpl_scaf_56339-9.8

TTTTAATTTATTGAAATATTATGGTTTTGCAGGACGAAACTTCATCAGATCCATTTTCTACAGCCACTAGCCCCTCCAGAGGATCCAGGGGTAGAAGAAGTAGTCGGGGAGATCCTTTAACTTCCAGTCCAGGAAGAGATTTACCCCCCTTTGAAGATGAAAGTGAGATGGATCAAAATGCTGTTGTGGAAGAAGAAGATGGAGAAGAACTATTTGGAGACAATTTAGAACAAGATTATCGTCCAATTCCTGCCTTAGACATTTACGATCAGGAGGGTCTAGATGAAGGGGACTACTCTGACATATCTGAAACCCACCGCGCAGCAGCAGAAAGAGAGATACGTCAAAGGGAAAGAGAGGAAGGTCGTCATGCTGGCCGCATGAGAAGAGGGTTATTGTATGAAGATTCAGACGAGGAAGATGAAGCTCCAAGGAAACGTCGACGAGCAGAGAGGGCTGCTGAAGGGGATGTTGAAGATGAGGAGATGATTGAAAGCATAGAGAACTTGGAAGATATGAAAGGTCATTCTGTTAGGGAGTGGGTTTCAATGTTAGGACCCAAAACAGAAATTAAGAACAGATTTAAAAACTTCCTACGTACATTTGTGGACCAAAAAGGTCACAACATTTATAGAGAAAAGATCAGACAAATGGTTGAAGCCAACAAAGAAAGTCTGATAATAGATTATAACATGTTAGCATCTGTAGAACAAGTTTTAGCTTACTTCTTACCTGAGGCTCCAGCAGAAATGTTACAGAATTTTGATGAGGCAGGAACAGAGGTAGTGATGAGTATGTATCCTAACTATGAAAAAATAGTAAAAACAATTCACGTCAGGGTGGCTGAACTTCCACTGATTGAAGAATTAAGATCATTAAGACAGTTACATCTGAACCAATTGATTCGTACCAGTGGTGTTGTAACCAGTTCTACAGGCGTTATGCCCCAGCTAAATGTCATTAAATATGATTGTAATAAATGTAACTATATCCTTGGACCTTTCTACCAATCACAGAGTCAGGAAATGAAACCAGGTTCTTGTCCTGAATGTCAGTCAACCGGGCCCTTTGAAATAAACATGGAACAGACATTATATAAAAATTATCAAAGAATTGCAATGCAAGAGAGTCCAGGAAAGGTACCTGCTGGTAGATTACCACGCTCTAAAGATGCCATATTACTGGATGACTTAGTAGACATGTGTAAACCTGGAGATGAAATTGAATTGACAGGAATATACCACAACAATTACGATGGTTCATTGAACACACAGAATGGATTCCCAGTGTTTGCTACAGTAATTCAGGCTAATTTTATAACAAAGAAAGATGACAAATTAGCTGCTGCAAATCTAACTGATGAAGATATCAAAGCTGTTGTACAGTTATCTAAAGATGAAAGGATAGGGGAAAGAATATTTGCCAGCATTGCCCCTTCTATATATGGTCATGAGGAAATTAAGAGAGCGATCGGTCTTGCTATATTTGGTGGAGAACCCAAAAATCCTGGAGGCAAACATAAAGTGAGGGGAGATATAAACATTCTATGTTGTGGCGATCCAGGAACAGCCAAATCACAATTTCTCAAGTATGTAGAAAAGACAGCTCCACGTGTGGTCTTCACAACTGGACAAGGAGCATCAGCTGTGGGATTGACAGCATATGTACAAAAGAATCCTGTGTCAAGAGAATGGACACTGGAAGCTGGAGCTTTGGTGCTAGCTGATAGAGGAATCTGTTTAATTGATGAGTTTGACAAGATGAATGATTCTGACCGAACCAGTATACATGAAGCCATGGAACAGCAAAGTATTTCAATTTCTAAAGCTGGTATTGTTACCTCCCTTCATGCTCGTTGCTGTATAATAGCTGCTGCTAATCCTATTGGTGGAAGATATGACCCCTCATTGACCTTTGCTGAAAATGTAGATTTAACAGAACCAATTTTGTCCAGATTTGATGTCCTTTGTGTAGTTAGAGACACAGTTGATCCTGTTCAGAACACACTGAACACTACTTCCTCAGTAGAACCTTTACCTCAGGATTTACTCAAGAAATATATTATTTATTGTAAAGACAAAGTCCACCCCAAACTTCACCAAATGGACCAGGACAAAGTTGCTAAGATGTACTCTGAACTCAGAAGGGAATCTATGGCCACAGGCAGTATACCTATAACAGTGAGACACATAGAGTCCATGATTCGTCTGGCTGAAGCTCATGGCAAGATGCACTTAAGAGATTATGTCAATGAAGACGATGTCAATATGGCTATGAGAATCATGTTGGAGAGCTTCATCAGTACACAAAAATTCAGTATCACAAGAACGATGAGAAAGACATTTAGCAGATACCTCACATACAAAAAGGACAACAATGAATTGTTGTTATTTATTCTTAAACAACTTGCTATGGACCAGATGTCATTCCAAAGGAACAGATTTGGCCTGGATCAAGAGACGATAGAAATCTCAGAAAAAGATTTAGCTGATAAGGCTAGACAAATCAACATTAGCAATCTCACATCATTCTACGAGAGTGACATATTTAGAGCAAACAGATTTAACCACGACAGAAAAAGAAAATTGATCATACAGACTGTTTGATAAACAGCTTGACATTGTTACTGTAATCAATTTGAAATTCTGGATGCCTTCACAATTTTATGTCAAATAGTGCTATATATGTACACCATTTGTGTTCTAAATATTAAACCTGTGTTCATTTAAGTGCAAAAGAGAATAATTTATGCTGAAGCAAAAATTATTGACTGTAAAATGGAGTTCAAATTTTGTGTCATCTCCATAACAGAGCCTAATGCAGGAGTTTCACTATCTTGTTGTTCGTAAGAGCAATTTAAAGTATCTCAACAAGGGCAAGAGAGACTTCCTTGTTCTGCAGTCTTATTATGGAAAGCAAGTGTTTTTCAACTCCATAACTTCTGTTGACATAATAACCTTGGTATAATGATATTTTTTCAAAGGCATAACAAGCCTACTAAAAAAAATATATTTTCTATATTTTTCTATGAATTTTTACTGTTTCAGAAGATGCAAGAAATTTTGTAAATGAAATATGTTGGATGATAGTGACATATTTATATAGATGAATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00493	MCM	MCM P-loop domain	Domain	Interproscan
PF12619	MCM2_N	Mini-chromosome maintenance protein 2	Family	Interproscan
PF14551	MCM_N	MCM N-terminal domain	Domain	Interproscan
PF17207	MCM_OB	MCM OB domain	Domain	Interproscan
PF17855	MCM_lid	MCM AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001208	Domain	MCM domain	Interproscan
IPR008045	Family	DNA replication licensing factor Mcm2	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR018525	Conserved_site	Mini-chromosome maintenance, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027925	Domain	MCM, N-terminal domain	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan
IPR033762	Domain	MCM OB domain	Interproscan
IPR041562	Domain	MCM, AAA-lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000727	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006268	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0042555	Cellular Component	MCM complex	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:1902975	Biological Process	mitotic DNA replication initiation	Interproscan
GO:1905775	Biological Process	obsolete negative regulation of DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02540	MCM2; DNA replication licensing factor MCM2	EC:3.6.4.12	DNA replication	ko03030	PMID: 28812709
			Cell cycle	ko04110	PMID: 28812709
			Cell cycle - yeast	ko04111	PMID: 28812709
			Meiosis - yeast	ko04113	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56339-9.8 global RNA-seq network