Gene detail

Detailed information of Bpl_scaf_56339-7.23 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56339-7.23	RAN GTPASE-ACTIVATING PROTEIN 1	Bpl_scaf_56339	736213	741599	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_56339-7.23

ATGACTTTCTGTTCTCTCTTGGTAAATGTGAAACACACTCTTTTTGGAGGTTCTTCCTATAATTGCAGACGACAGGAGGCCGCGTGGTCCGGAAACTGGGAAAGCGATGAAGATTCGGAAGACGAAAACGCCCACCCGTGGCGATTTTGGAGGAGGTTTTCTCTTCGTCGTGGCGAGAAGGGAAAAAGAGACTTTCTTAACAGAGAGGAACTTGAAAAGTATGATGCAAATAATAGACTTTTCCCCGATGACGATTGCAAGAGGACCAACAGTTTGAGACCTCCACCGAAACCTCCTCGTTTGTTTCTATTCAGGTCTTCCTCCATTAGTACACCACGTTCTTCAGTTGTGGGGCAACAAGACAGAAATTCGTTTGTAATGTCTCAAGCTTATCAAAGCTCACGTTCACGCGACAGCAACGTGCCAACTGCACATGTAGTTCCCATTCAAAAGGAGAACGGAACGCTTTTGCAATCCAAGGTTGTTGCAGAAAACAATAACATTACAATTGATAAACATGCTGCTGATGAAAAGTCGCTATCAAATGACGTAGATAAAATGGTTTTGGGTTCATCTTATTCATCATCTTCCAAAATAAAAATAGTAACGCCAGATCTTAATCCAAGGCGGACCATTGGCAGATCAAGGAAAATGTCTGTAGATGTATCATCATCTGATAGTCATCGATTAGTACTTCAAAATGCATCTGAACTGCTTTGCCAAACGCTAGATCCAACTATTCTTCTTGAGGAATTATCCGAACGGAAAGTTATATCAAAACTTGACTTTCAAGCTTTTAAAGGTCACCCCGATAGGCGATTAATTTGTGAAAGCCTGATACACTCCTTGATGGAAGGTACATATGGTCAGTTTATTGCCTTTTGTGATATTCTTAAATCAAAGAAAATTTATGAAGATATGGTTGTGATATTAGATGTCATGAAGGACACATACAACGTCATCTTTAACATTCCAGTAACTGGTGTCTGCTCAACCTCAATACCAGATGAGGACAAAACTATAACATTTGAAATCGGTTACTTCAACAGTCAGCTTAGAAAGTTGAAACCACTAGTGCAGTTAGAAAAGGCACGTGACTATAAACGATATTCTCGCGATTCAATGTTATTTAAAAGGTCATCCCGTATTTCGTATATGTCTACTACGAGTGACAAAACTTTACTTGATGACGTGGCCGGAAATGAGCAGGGAACACCCATGATAAACATTAATATTTCCGGTTATTCACTTAGAGGTGAAAGAGCAAAGGCCGTAGCCGCTATTGTAGAAAAATATGAATGCATTTTAGAACTTCATGTCGGGAAAACACAAATGTTTGGAGTTGATATAGGTTCTATGGCAGTGTCTTTGCCAAAGACAGTATCGCTGTCGGTTTTAGACCTGCGTTTAAACTCAATCGGAAATGAAGGAGCTAAGCTGTTGTCTTGCTTTTTACAGAAAAATACAAGTATTCAACAACTCAATCTTTCATCTACCGGAATAGAGAGTGACGGATTTAAGAACATATGTGAAGCATTGAAAAATAGTCCATGCATTCATGAATTAGACTTTAGTTTTCTCGAAGTGGCCGACAGCGGTTGTATTGCTATTGGTAGTATGTTGAAACAAAACAAATCGTTGACAAAATTACGACTTAGAAGTGCCAACATCTCATGGATAGGTTGTGGAATACTTTTCGAAGGCGTTCAGCAAAGTAAAACTTTAGTTGAACTGGACATGAGTCGAAATTTTATCGGTGACGACGGTATGGAAATGATGTGTCGCCATTTGAATGACAAAACAAGTTTGTTAGATCTGAATTTAGAAAACTGCGGCATTACTGCTTCCGGTTGTTCATTGTTGTCTGACGTCATTTTGGGTAATAAAACAATACAAAATTTGGATCTGAGTTCCAACTTTATCGGTGATTCTGGAATATCGAAACTTGTGGCGTCATTAGAAAGAAATAAATCTATCAACAAATTAGGACTGAACATGTGTGGTATAACAAATGATGGCTTTTCAAAACTTCTAGACGTCTTAGAATGTAATCCTACAATAACACTGATGAAGCTGTGTTATAATAGACTTGGACGTGAATATACAAACCCCGCTGCGGCCTCGGACGATCTTCGTTATCGTGTTCGAATTGTGACATCATCTAATCCAAAACTTAAGCTCTTATTATGGGGAAATGCATTTGATGATGCGTAA

Transcript

Bpl_scaf_56339-7.23

ATTCTTTTATTCTAGTTTTATGTTAGAGATTTGACATTTATTAACTTATAATAATGGATTTTCCGTATGAATTGAAGATTGAATATTCATTGATAGCAGACGACTGGAACCAACAGCTTAATGCAAATGATCTTTTATTATACAATTATATCTGACTCATCCGTTTTTACACAATTCAGAATTAAAACATCGTCCATTATATGATATTATATAAGTGATCATATGTGAATTCAAGGATGACTTTCTGTTCTCTCTTGGTAAATGTGAAACACACTCTTTTTGGAGGTTCTTCCTATAATTGCAGACGACAGGAGGCCGCGTGGTCCGGAAACTGGGAAAGCGATGAAGATTCGGAAGACGAAAACGCCCACCCGTGGCGATTTTGGAGGAGGTTTTCTCTTCGTCGTGGCGAGAAGGGAAAAAGAGACTTTCTTAACAGAGAGGAACTTGAAAAGTATGATGCAAATAATAGACTTTTCCCCGATGACGATTGCAAGAGGACCAACAGTTTGAGACCTCCACCGAAACCTCCTCGTTTGTTTCTATTCAGGTCTTCCTCCATTAGTACACCACGTTCTTCAGTTGTGGGGCAACAAGACAGAAATTCGTTTGTAATGTCTCAAGCTTATCAAAGCTCACGTTCACGCGACAGCAACGTGCCAACTGCACATGTAGTTCCCATTCAAAAGGAGAACGGAACGCTTTTGCAATCCAAGGTTGTTGCAGAAAACAATAACATTACAATTGATAAACATGCTGCTGATGAAAAGTCGCTATCAAATGACGTAGATAAAATGGTTTTGGGTTCATCTTATTCATCATCTTCCAAAATAAAAATAGTAACGCCAGATCTTAATCCAAGGCGGACCATTGGCAGATCAAGGAAAATGTCTGTAGATGTATCATCATCTGATAGTCATCGATTAGTACTTCAAAATGCATCTGAACTGCTTTGCCAAACGCTAGATCCAACTATTCTTCTTGAGGAATTATCCGAACGGAAAGTTATATCAAAACTTGACTTTCAAGCTTTTAAAGGTCACCCCGATAGGCGATTAATTTGTGAAAGCCTGATACACTCCTTGATGGAAGGTACATATGGTCAGTTTATTGCCTTTTGTGATATTCTTAAATCAAAGAAAATTTATGAAGATATGGTTGTGATATTAGATGTCATGAAGGACACATACAACGTCATCTTTAACATTCCAGTAACTGGTGTCTGCTCAACCTCAATACCAGATGAGGACAAAACTATAACATTTGAAATCGGTTACTTCAACAGTCAGCTTAGAAAGTTGAAACCACTAGTGCAGTTAGAAAAGGCACGTGACTATAAACGATATTCTCGCGATTCAATGTTATTTAAAAGGTCATCCCGTATTTCGTATATGTCTACTACGAGTGACAAAACTTTACTTGATGACGTGGCCGGAAATGAGCAGGGAACACCCATGATAAACATTAATATTTCCGGTTATTCACTTAGAGGTGAAAGAGCAAAGGCCGTAGCCGCTATTGTAGAAAAATATGAATGCATTTTAGAACTTCATGTCGGGAAAACACAAATGTTTGGAGTTGATATAGGTTCTATGGCAGTGTCTTTGCCAAAGACAGTATCGCTGTCGGTTTTAGACCTGCGTTTAAACTCAATCGGAAATGAAGGAGCTAAGCTGTTGTCTTGCTTTTTACAGAAAAATACAAGTATTCAACAACTCAATCTTTCATCTACCGGAATAGAGAGTGACGGATTTAAGAACATATGTGAAGCATTGAAAAATAGTCCATGCATTCATGAATTAGACTTTAGTTTTCTCGAAGTGGCCGACAGCGGTTGTATTGCTATTGGTAGTATGTTGAAACAAAACAAATCGTTGACAAAATTACGACTTAGAAGTGCCAACATCTCATGGATAGGTTGTGGAATACTTTTCGAAGGCGTTCAGCAAAGTAAAACTTTAGTTGAACTGGACATGAGTCGAAATTTTATCGGTGACGACGGTATGGAAATGATGTGTCGCCATTTGAATGACAAAACAAGTTTGTTAGATCTGAATTTAGAAAACTGCGGCATTACTGCTTCCGGTTGTTCATTGTTGTCTGACGTCATTTTGGGTAATAAAACAATACAAAATTTGGATCTGAGTTCCAACTTTATCGGTGATTCTGGAATATCGAAACTTGTGGCGTCATTAGAAAGAAATAAATCTATCAACAAATTAGGACTGAACATGTGTGGTATAACAAATGATGGCTTTTCAAAACTTCTAGACGTCTTAGAATGTAATCCTACAATAACACTGATGAAGCTGTGTTATAATAGACTTGGACGTGAATATACAAACCCCGCTGCGGCCTCGGACGATCTTCGTTATCGTGTTCGAATTGTGACATCATCTAATCCAAAACTTAAGCTCTTATTATGGGGAAATGCATTTGATGATGCGTAAGCAAGGATCTTTGTACGGCAGGTCATTTTCATACTTTCTAAGACTTTAAATTTTAGCATATATAATTTAAAATTGGTATATTGTCATTATCATTATTTAATTGTTATTTATTTTGCATAAAATATGTTTATATCTGGTTATATCTTACATTTCAAGCTAGCCTCATGATAACATAATAGTTAGTTGATTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027038	Family	Ran GTPase-activating protein	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24113	RAN GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_56339-7.23 global RNA-seq network