Gene detail

Detailed information of Bpl_scaf_56339-16.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_56339-16.10	RAD54-LIKE	Bpl_scaf_56339	1634493	1664893	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_56339-16.10

ATGTCACTTGAAGCCTATATGTCTGGAAATGCTGGGGAGGACATTTATGGTGTTCAAAATGTTGACATGAATCCTTTCCAGCAAGCTGATAATTTTGATGATATACATTTAGGAAGTGGCAGTAATTCATTACTAGATGTACAAGATTCATATGCTGTTGCAAAAAATCAAATAAAACCAGAAGAAGGTAATGAAATTCAACAAACTGATGAAACTGGCTTAAGTAAACCAAAGAAAACTCGTAAACGAAAAAAGAACGGGGACGACAAGAAAAAAGAAAAAAAGAAGAGAAAAAACGAAGAATCTGAAAGGAAGAAAAGACTTCAAGAATTGAAGAAATCACTAATGGAGAAAGAAAAAGAAAAAGATTCCCAGCTGAAGTCTTTATTAGAAGATGATGAAGAAGACAAAAGCAATGATATTATCTTATTGGACAGCAGCGATGAAGGGAAAAACAAGAAAAAAGATGGTGATGTAATTGACATAAGTAGTGATGAAGATGACGTTATGATATCTACAGAAACAGAAGATGATATTGTAGAATCAGAAGATACAAACAATAGTGGTAGTCATATTGACGATACTTTAAATCACCCAGATGAACAAGGAAGAGTATTAGTTAATATAGGACATCCTGCTGATGAACCTGATATATTCCTTGCTCCACAGATAGCTAAATATATCAAAAGACATCAGATTGGTGGTGTGAGGTTTTTATATGATAATCTAGTGGAATCACTCTCAAGGTTTAAAAGCAGTCCAGGTTTTGGATGCATCTTAGCTCACAGTATGGGTCTTGGTAAAACCATTCAGATGATATCGTTAATAGACGTTTTACTGAAATACACATCAGCAAAATCTGTCCTGCTTATTGTTCCTATAAACACTTTACAAAATTGGTTGTCAGAGATCAACATGTGGTGTCCAGAATCTGTACCAGAAGGATTTCCGGACGTGCAGCTACGAGAATTTAAATGTTACATTTTGAACGATAACTACAAGACACCAGCTGCCAGAGCCAAAGTCATAGTGGAATGGTATAAAACCGGTGGATGTTTGTTGATGGGTTATGAGATGTATCGTCTTATGACAAGTCGTAAAGGTCATATAACACAACCAAAGAAACCTGGTAGGAAAGCTGTTGGTAAAGACATGGTCATAGATGTTGACGAGGAAGATAAAACTAGAGATATGTTTGTTGATGTTCATGAAGCACTGATAAATCCAGGACCAGATATGATTGTATGTGACGAAGGTCATCGTATCAAAAACAGTCATGCTGGAATTTCACAGTCCCTAAAAAATATCAGAACAAGGAGAAGAGTAGTTTTAACAGGGTATCCATTACAAAACAACTTGATAGAGTACTGGTGTATGGTTGATTTTGTACGTCCTAATTACCTAGGAAACAAGACAGAATTCTGTAACATGTTTGAACGACCCATAATGAATGGCCAGTGTGCAGACAGTACTGAATCAGATACAAAATTAATGAGATATAGGGCCCATGTTTTACATAGTCTCCTGGAAGGTTTTGTACAAAGGAGAGGTCATACAGTACTACAAGCTGCTTTACCACCAAAACAGGAGTATATCTTATTGATAACAATGTCTCAGACACAGAAGATGTTGTACAAAGAGTTCATGGACAATTTAGCAGAGACTAGTCTAAATACATGGGCAACAACAAATCCACTCAAGGCTTTCTCTGTTTGTTGTAAGATTTGGAACCATCCTGATATTTTATATAAAATAATGAGACAGAAGAAAACAGATTTGGCCGATGAGAATGACTTAGACATTGAAACAGAGACATCAGGTGGCAAGAAGCGAGGAAAGAAGGCATCTGCTGCTGCTACACAACCAGGCTTGTCTTCCTTTGCTGACAAGAAAAGTGATCAAGTCATAACATATGAATGGGCTGACAGATTGTTGAAGGATTATACACCTGGTCTGTTAGAAATGGGAGGTAAAATGGTGCTGCTGTTTGAAATCATTAATGAAACACTGGCTTGTGGAGACAAGCTTTTAATATTCAGTCAAAGTTTATTTACATTGAGTTTAATTGAAGAGTTGTTATCAAAACTGAAAGTTACAAGACCAGATCAAGACGAATATTGGTGCAAAAACAAGAATTACTTCAGACTTGATGGAAGTACTATGGCACAAGAAAGAGAAAAGTTGATATGTCAGTTCAATGCTGTAGATAATAATAGAGTTTGGTTGTTTCTGCTTTCAACAAGAGCTGGTTCTCTTGGTATTAACTTGGTAGGAGCTAACAGAGTTATTGTACTGGATGCCTCGTGGAATCCATGTCACGACTGTCAAGCTGTTTGTCGTGTGTACAGATTTGGTCAAGTAAAGCCATGTTTTATATACCGACTGGTCACAGATAACACCATGGAAAAGAAGATATATGACAGACAGGTCAATAAACAGGGAATGTCAGATCGTGTTGTAGATGAATTGCAGCCACAAAATAATTTTTCCAAGAGACATGTTGATAATCTTCTACACTATGAGGATGTAGAAACAGACCCATTAGATTTCACTAATTGTCATACAGAGTATAATGACGAAGTGTTAATTCGAGTCATGAAGAGGCAAGGTCATTGGTTTACAAAGAAACCATTTACACATGAGTCATTGCTGATAGACAAAAAAGAACTTAGATTAAGTCAGAAAGAGAAGAGATTAGCTAAGCAGAGTTATGTGATGGAGAAAAGGCTTAATCTTACATATACAAGACCGTCATATGCTGCATTTTATCCAAAGGCTGGAGGTCCACCACAGATCAGACCAAATCATCATCCTCCATGGAATCAACCAACTACCTTCAATCGACCTGTAGCAAGTGTTAAGCCAATGATGACAACGCCTGTTCCCATGAAACCAAAAGATGGTGTTTCTGTTATACCTCAAACAAAACCTGGTGTTACTGTTCATAAAATTGTAACCACAACAGACATTACCTTGCCGGGTACCAGTACAAATACCCAGTCAGGTGTCTCAGCTAGTGGTGGTACTTTGATGAACAAGATACCTGCTGGACAACAGGTCTTTGTGATCAAAACACCAAAAGGAGTTTACATTCGAACAAAGGAAGGAAAGATATTTGCAGTTAGAGCAAAAACTCCTCTAGTCAGTGGCATTTCATCTGCTCCATCTACTTCTGTTACCACGGTTACAATTAAAAATTCTGCAGCTACAGTTACACCAAAGATAGGGACTGCACAACCAATAATAGTGTATCCCAAACCTACCACAGCAAAAATCACCAAGAAACCTCCTCAAAGGCAACCTAAAATAAAAACAATTAGACCAGACACAAACCAAAGTAGTCCGATTGTTTCAAAGAATCAGATTAGTCCGATTGTTTCAAACAGTCAGAATCAAGCTGGTGTTAATTCAGTCAAGTCAGACAACTCTAGATCCGATAGTTTAATGGATCTAAATACTGTTCAACCTGAATCTGAAAGTGAAACTGGAGGCAATATTTCTGAATTTAACAGTCAAACTGCATTAAGCAGCAATAGTGTATTGAACAGTCAAACTGCATCAAACATTGAGAATGTATTGAACAGTCAAACTGCATCAAACATTGAGAGTGTATTAAACAGTCTACCTAAATCAACCGTTCAACCACAATCCAGTAGTGAATTTGTATCAGATGTATCAAATAATCTTGTAGATTTAGATAGACAAAATAGTTTTAATAGTCAGATGAGTACTCCTGATGTACAGTTTGGTCTTTCTGATAATAATGACAGTCAGTTTGGATCAGACATTGGAAATTTTGATCAGTCAGACAGTAGCAATAGCAACAGTCAAATGTTTGAAGTAGAGAACCAAAGAGGTGAACGGCAACAAGGATTTTTAGAATCGTTGTTTGATCAATCAGAGATTACGCCATTTCAACCATTAAGACAGGACTCTAATAATTCCTTCCATCATGTGGATTCTTCTGCATCTTTATCTTCAAATATAGGTCATATAGACTTGCGTGATGACGGAGACAGAAGTCGTGAAGAAAGCCATGGAAATATGGATACATTCATGTCAAGATATCCTAGGATTGCTCCTAACACAATGCGAAACAATTGTCCTCCTCAAAACAATCCTATGTCTCACATGTTTAATCCAATGCAGGGATTCAACCAAGGATCACCACAGATGGGATATAATCCAATGTATCCATATCCAGTATTATTTCCTCCGAATTCACATCCATCTCAACCGGTCACGTCAACTGATGGATCCACCGCAGCATCGTCACAGTCCAATGACTTTATGTCTCCCATACAAAGCATGTCTCAGATGGGGTCTAGTCCCATGATGGGATTTCCATTTACACCATATCCATTTCCTATTCCCTCTCCGTACATGATGGGCAATCCTTACATGCCAATGGGTATGCCACCTCAATATGGACACCAAGGTGGCATGCAAGGTGGCATGCAAAGTAGCATGCAGGGTGGAATGATGCCACCACCTAACAGTGTAAATACAAATCAACAAATTCAGGACAATAGTCAAACATCTCAATGA

Transcript

Bpl_scaf_56339-16.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR044574	Family	ATPase ARIP4-like	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45797	RAD54-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10876	RAD54L2; RAD54-like protein 2	EC:5.6.2.-	DNA repair and recombination proteins	ko03400	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_56339-16.10 global RNA-seq network