Detailed information of Bpl_scaf_56162-4.4 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_56162-4.4TNF RECEPTOR ASSOCIATED FACTORBpl_scaf_56162383338409117+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF16673TRAF_BIRC3_bdTNF receptor-associated factor BIRC3 binding domainCoiled-coilInterproscan
PF21355TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR002083DomainMATH/TRAF domainInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR012227FamilyTNF receptor-associated factor TRAF, metazoaInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR032070DomainTNF receptor-associated factor, BIRC3 binding domainInterproscan
IPR049342DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005164Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0009898Cellular Componentcytoplasmic side of plasma membraneInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03173TRAF2; TNF receptor-associated factor 2EC:2.3.2.27
Protein processing in endoplasmic reticulum ko04141PMID: 28812709
MAPK signaling pathway ko04010PMID: 28812709
NF-kappa B signaling pathway ko04064PMID: 28812709
TNF signaling pathway ko04668PMID: 28812709
Sphingolipid signaling pathway ko04071PMID: 28812709
Apoptosis ko04210PMID: 28812709
Necroptosis ko04217PMID: 28812709
NOD-like receptor signaling pathway ko04621PMID: 28812709
RIG-I-like receptor signaling pathway ko04622PMID: 28812709
IL-17 signaling pathway ko04657PMID: 28812709
Adipocytokine signaling pathway ko04920PMID: 28812709
Osteoclast differentiation ko04380PMID: 28812709
Pathways in cancer ko05200PMID: 28812709
Viral carcinogenesis ko05203PMID: 28812709
Small cell lung cancer ko05222PMID: 28812709
Non-alcoholic fatty liver disease (NAFLD) ko04932PMID: 28812709
Hepatitis C ko05160PMID: 28812709
Herpes simplex infection ko05168PMID: 28812709
Kaposi's sarcoma-associated herpesvirus infection ko05167PMID: 28812709
Epstein-Barr virus infection ko05169PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_56162-4.4 global RNA-seq network
TOP