Gene detail

Detailed information of Bpl_scaf_55162-1.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_55162-1.11	PROTEIN-TYROSINE-PHOSPHATASE	Bpl_scaf_55162	80586	99291	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_55162-1.11

ATGCAAGAAATACTTATTACCAATAATCAGCCAGTTACTGGATGGTTTGAGAATTACTTCCCTTACATTGCTGCAGCCTGTAGTGTATGCATCATACTGATGACAGCAGTATTGATATACTGTTGTTGTAAAAAGAAAAAGGAAACGGAGGACGTTAAGGGAGGTCAGAAACTCCAACAGATTTATTTTCCATCCGTCAAACCTGACATGAAGGATCCCAAGATGATACAACCTGGTGGTAGCCCCCTGTATACATCCCCTGGGAGCATCACACCAGTACAGACACCCACAGGGCGTGTCAAGGCAAAAGGACTGTTGGAAAGGAGAGGATCCAATGCTTCTCTTACTATAGATTTAAATGCCTCACCAGAGATGGGACGTTGGGATGGCACTCCCCCTAAAGAAAGTACTGGTGTAGAATACCTGTTGACTGCAGGTCACAGATTGAGTAGACAAGATCTGAAAAATGCTGTCCGAAATAACAGAGCCTTACACCAGGAATTCTGGGAAATATTTATGAACCACCCTGAAAAGGTTCATGTAGCTGGTTCTGGTATGAAGAACAGATACCGAACCATTATACCAAATGAACACAGTAGAGTTATTCTACCTGATAGTGAGTGGGATCCATTATCATCTTATATCAATGCTAACTACATCAGAGGGTATGAATGTGAACCGCACACCTACATAGCAACACAAGGTCCTATGTCACATACCATTGTAGATTTCTGGAGAATGATTTGGTGTGAAAAAGCTCCAATTATTGTTATGATTACGAAGTTGAAAGAAAATAATAATACAAAATGTGAAAATTATCTTCCTGAAGACAACTGTTCTTGCATGTTTGGTGATATAGAGGTCAAGGTTGACAAAGTGAAGGTGAAGCAAGGATATACTGTCAGACTTTTGACATTAAAGTGTGATGGAGAAACACTACATTTATTACATTATTGGTACACAGCATGGCCAGATCATAAACCCCCACAGTCAGCCAAAATGTTACTAGATTTAGTTAAAGATGTAGAAAATAAAAGACTGAAAGATCAGCCCAGTCAAGGCCCAGTAGTTGTGCATTGCAGTGCTGGTATTGGAAGAACAGGGTGTTTTATTGCGATCACTGTTGGTATGAGACAACTTAAAGAAGAACATTCTGTAGATGTACTGGGCATAGTTTGTCATATGAGAATTGACAGGGGAGGTATGATACAGACACATGAACAATATGAGTTTATACACCAGGCCTTATGTGAATATGAGAAGGAATTAGCAGAACCCGAACAAACAACAATAAATGGTTTCCCTGGTGATTGACGACAACATATCTATAATCAGCGAGTATCATCATCAATCGTTCATACAAATATCATACTGGACAATTGACCGATAGCATATTCTTTTCTCTTTTGTCAATATTTAAGTTATATGTTCATAGGCGCTGCATCTTGTGTTGTCCATTTTTAGCAAACTTTTTTTTCTTTTTTTTTTCACCAGAATATTTAATTTTATCCAAAGGCAGTGATTCAGCTAGGCAACAGTCTCAGGGCATTTACCTATTATTCAAATTGTCCTGAAAAACTTTATAAAAATTAGTTTAAATATTAAAGAATGTCCTGAAGACATTTTAATCAAACTGGCAATTGTCCTGAAGATTTCAAAGACTAGCTGAAACACTTAAAGGGGTTAATATAATGCAAGAGTATTATCTATGTTATGTTGCAATCTGATGTTTTCTTAACTTGATTAAACTTGATTGAAAAAAACTTAAATTTTAATTTTTACCAGTTTCTTTTAAGAAATCAGTTGACAGGTATGATGTAGTGGCACAATGTGTTCATATTAATTGAAACTTCATGTAAATTAATCATGTGACATATTAGTTTTGTATGATATAAAGATTGAGAAAGTCACATGATGATCATGTGACGAGAGTATAAATGTGTTTGTTATTGATGTCTGTGATATGTACAGTTTGTATGTATAATTGTTGCACATTCTGTTCATTCATTTTCGTGAATAGGATTATTATTCTTTTATCTTAATTGGCCATGTTGGCTTTTGGCATCCATTGCCTGTCCTGTCCATATTCTGCAAACTTTGCACCTTTTAAATAACCATTGGACCAATGATGGATTTTGCTTCCATTCAAAAATTATATCTGACAACACAATTATTCATTCTTCAATGGTGACTTCCAGTACCCAAAATAGAAATTTCTTTCAACGTAAAACTTTCTAGATTTTAAACCAGAATAGACTGGAATTTAAACTACTTGGCCAAGTTTCTACATTATTGAGGTAGACAGAGATAAAATATTGAACTATTAAATTTGTATAATAATGTAAATATTGTAGATTTTAGACATACTACTACTAGACTATCTATTGAACACTTACATTGTTAACTTGAAGATGAATGTAAATCTGGTGAGCAAAACCTACTATAACTACCACGATATAACTGAAATATTGTTAAAGGTGGCATTAAACACCAATTAATCAATCAATAATTTTCAAGAGAGAAAGTTGAAGATTTATTAAAGAAATTTATTACAATTGTTGTTCATATGCTAAAATGGGAACATTTTTATAGCAGGTCAGTTAGTTGGTATACAATTTTTAACACGGGGCTGTTCCATTAAGTTATAATTAGCATTTATCAATAAAAAGGCATTTTTAAGAGTATATGTATGTGTATTTCACTATAAAATTGCAGTTATTTTGTCCTATAAATATTGTTGTTTTGTAAGATCTGATAATGGTACTACTCATACTGTATAATAATATATGTATCATTTGAATCTCTTTATCATGTGTATAAATATATATATATGATAAACTACATTTATATAGTGCTTTTATATGTTTGATGTTTCCAATGCTTTTGTAGAAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR008356	Family	Protein-tyrosine phosphatase, KIM-containing	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46198	PROTEIN-TYROSINE-PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0035335	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04458	PTPRR; receptor-type tyrosine-protein phosphatase R	EC:3.1.3.48	MAPK signaling pathway	ko04010	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_55162-1.11 global RNA-seq network