Gene detail

Detailed information of Bpl_scaf_54213-0.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_54213-0.10	MYOSIN LIGHT CHAIN 1, 3	Bpl_scaf_54213	101126	159217	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_54213-0.10

ATGGGTGAAGGTCTAACAGCTGACCAAATAATGGAAGTAAAAGAAGTGTTTACATTATTCGACAAAGACAACGATGGCTTTATCAACCCTGAAGAATTAGGAAATGTAATGAGAGCCCTGGGACAGAATCCAACAGAGGCTGAAGTACATATGTTAACACATGATAATAGTGAAGATGGAAAATCAACAGTAGATTTATCAGAAATGCTTAGTATAATGTCTACACGGATGAAACCAAGAGATCCTATGACAGAACTGAGCGAAGCTTTTAGAGTATTTGATAAAGAAGGCAAAGGGTATATCGAATCTTCTAATTTCCGACACATCATGACTAGTATGGGAGAAGTTATGTCCCCAGACGAAATTGACGAATTAATTAGAGAGGCTGACAAAGATGGCAACGGGAAAATAAATTATGAAGACATCAAACAGATTTTTCAACACTTTAACAAGAATAATGATGGAAAACTTTCAAAAATGGAACTTCGAATCATGCTGCGGTCATTTGCAAAAAATCCGACAGAAGCTGAATTGCAGGATTTAGTTAAAGAAATAGATTTAATGGGAAGTGGATCGATAGACTATCAGGACTTCTTGTCATTAGTTTCCAAATCAATGAAACAAGAGTGTTCTGACGAAGAATATGCAACTGTGTTCAGAGTTTACGATTCCGACGGAAATGGCGTCATTACCTCTGATGAATTCAGAGAAGCCATGAAATCCATGGGAGAAAATTTGTCAAAACTAGAAGCTGAAGAAATGATAGTGGAAGCGGACAGTGATGGCGATGGTCAGATAGATTTAAAAGCTTCTGGACAATGTATTGAAGACAATATGAATATGTTTAAAAGGAAGAATACAACAGATGAGGAGGACTTGCCTCAAAAAAGAAATGCAAGTATCAATGAAAACAGTGGAGACGATACAGATGATTTATCTGTCAACCAACAACCAACTACTTCTCCGTATAAAAGATTCTTTGGCAAATTCATTCCAAACTTGTCTTGGTCAAAAACTGAAGAACATATATCAGAAAAGGGAGATAATCCTGGACAAATTATAGCAGATAAAAGTTCAAGTCCTTCGGTGTCAGGTAGAAATAGTTTATCTCCTAGGAAGGCAAGCTCAATCATAACAAATAGTAAAGGTACAGTAGTACTTGTTGGGAAAATAAAACTTAAGAACAAATGGACCAATGATTTGTTACAGTCAACATCAGAGGATTATAAAACCATGACTACTAATTATATCAAGTTGATTGATGATCTTCTACATAACAGTAATGTATCCAAAGTTTACATGAATTCTGTTGTCGTTAAGTACAGTAATATTCCAAACAGTAGTACACGGGCCACCAGAAAGAGTCCTGGCAATGTGATGGTACATTCAGAGATGACATTTCATCATACGTACACAAAACTGTTTACAGATTTACAAGAGCTGTGTGACAATGTAGAAGATTTTATTACCCTGCAGTTTTCTCTTGTTGCTATCGAAAAAGAAGAAAATACAAAGGAACCAGATGATGATACAAATAATGATCTAAATGGACTTTCAGATAATAGAAGTGTGGAGGAAAATGCTGAAGATAATTTTGTTGATGCAAAGGAGATGAATGTAGATGAAGTTGTTCAGGATGAAGAACACACAATAGATGATCAAAACAATGAAACAGCATCTGATAAACAAGAAATGGAGGAAGGAACTGTACAACAGGAACCAGAAAGACAGGGAAACAGTGGTATTGGGACAGGAAGTCAAGACGACAGTGGTACTGGGACAGAAAGTCATGAGAAGAGTGGTACTGGGACAGGAAGTCAGGACAACGTTGATACTGGGACAGGAAGTAGGGATACAGAGATGATTGAAGTAATAGAAGAAGAAAATATAGGAACATCAGATGGGAAAGAGACAAAGGATGAAGTGTCGACTGCTGATGGAGAACAGATAGAGATAACTGTCGGGGATGCTGGAGAGGGAGAACAGATAGTAGTTGGCAAAAAGAGGATATCAGATGTTGTCAGCGAGCCTGTAGATGTACATGTAGATGAATACAAAAAAGGAAAAGCTAAAACTAGAAAAGTGGACTCCAAAAAGAATACACCAAAACAGAAGTCTTCTACAGGTAGAAAAGATCAGCCATCAGGTAGTGGTCTAAAGTCAAAGCCAATAATAACAAGGCATGTTCAGCAGAAAGAAGAATCAGACTCGGATAATGGTAGAGTACCATCAGAACCTGGTGTTCCCACATCTGTAGCCAAAACATCTAATGCCATTACGTTAAAATGGAGTCGGCCAAGGAAAGGTTTTAAATCGGTCGACCATTATGAAATAAAATACAAAGAATGTAAGAAAGGAAAGGGCAAATGGATATCAGTGTTGTCAGAAGGAGCAGAGAGAACCGTCAAGGTGAAGGATTTAAAAGCTGAGATGGAGTATGAGTTTAAGGTTCGAGCTGTAAATGAAGATGGTGAAGAAGGACCATTTTGCCAGCCATCAGTAAAGTTATCTACTGTCACATCATTAGCAAGGTCATTGATCCCTATGGCCAATCTGTTAGAAGATGGCCACCCTAAAGTTTACAAGCTGCCACTAACTAAACATGTTGATACTGTTAATGCCAGAGCTAAGACTAGGAAGTGTGTATTTGGTGTAGCACCAGAGAATTTAAATATGAGAGAGAAGACAATCATGGTGATTGGAGCTACAGGTTCTGATGCTAATGAACCTCCAGTCCGAGCAGCACTCAAGGCAGCTAATGTACCATATCAAAAGTCTTTTAAATTTAATAATTCTGCATTGTATGCATCACCTGAAAATCCTGAAGAGGCAGAAATGGGAAATCTCTTTTGGAAAATGGGGAAAGAAAATTTTAAGATATTCTTTGATGAACTAAAAACAGTGGAGTCTAAAAGTTTATTGCTTACATCAGAAGTATTGCAGCTGAGAAAAAGGATTGAAGCAACCATTCAAGGATTACAACAACAAATAGCTGATGGCATGAACAAGCTTAATACTATCAAACAGGAGAGAGAAATACTGAAACGACATAAAGCTGACATAAAAGCAAAGAAAGACTTCACGTATGAAGTTGACGAAGTTCATATGTACCAAGTTGACCTTGAACTGGGTGTGTATGTTACAAATTGTATGTCATGCAACAGAACATGCCATTTTCCATGTGGTATACCTGATGACCATAACAAACAAAACTGTGCTGCCATTGACCAACAGCTGTGTACAGTATGTCCAATGAATTGTCACTGGACTTTACACAAAAACAATAATTTTAGATTTGATACATATTCAATGAAAGTTACCAAGACTTATGAAGAACTTAAACAAAAGTATGAAATAGCACAGAAAGAAGCAGAAAAACATAAAAGTGTTCTTGGTAAAATAAAAATGGCATTTACATCTCTTGGTAATGATGTTATGAAGATGGTTCATGAAGTCAGGTGCAACATTAACAAGTTAAATGACATTGCACTGAGACCAAACCCACTCAGTGACAAAGATTACATTGATCTGTTGATTGAGAATGAGAAGAATGAAAGAAAGTATGGATGGGAACAAAGAATTAGATTATTCTATAAATTAAGAGAGGAGGCTGAGCTTGTAGAACAGATGCATCAACAGGATTACCAGCCATGGATTCTAGATGATAGCGATGAAAGTGATGACGAGTCATCACAAGACAACACTGATGATGATAAATCTACAGCTGATGAGGAGTTTGATGTAAAAAATATCAAGACAGAGAATCCAGATGTAGAGATGGCATGA

Transcript

Bpl_scaf_54213-0.10

TTCGAAAGAAAAAAGTGTCGTGCTTAGGACCGTTTTGGACAGTCATTGTGAAAGGTTGTGAACTAAAATAAATAAGAAAAATGGGTGAAGGTCTAACAGCTGACCAAATAATGGAAGTAAAAGAAGTGTTTACATTATTCGACAAAGACAACGATGGCTTTATCAACCCTGAAGAATTAGGAAATGTAATGAGAGCCCTGGGACAGAATCCAACAGAGGCTGAAGTACATATGTTAACACATGATAATAGTGAAGATGGAAAATCAACAGTAGATTTATCAGAAATGCTTAGTATAATGTCTACACGGATGAAACCAAGAGATCCTATGACAGAACTGAGCGAAGCTTTTAGAGTATTTGATAAAGAAGGCAAAGGGTATATCGAATCTTCTAATTTCCGACACATCATGACTAGTATGGGAGAAGTTATGTCCCCAGACGAAATTGACGAATTAATTAGAGAGGCTGACAAAGATGGCAACGGGAAAATAAATTATGAAGACATCAAACAGATTTTTCAACACTTTAACAAGAATAATGATGGAAAACTTTCAAAAATGGAACTTCGAATCATGCTGCGGTCATTTGCAAAAAATCCGACAGAAGCTGAATTGCAGGATTTAGTTAAAGAAATAGATTTAATGGGAAGTGGATCGATAGACTATCAGGACTTCTTGTCATTAGTTTCCAAATCAATGAAACAAGAGTGTTCTGACGAAGAATATGCAACTGTGTTCAGAGTTTACGATTCCGACGGAAATGGCGTCATTACCTCTGATGAATTCAGAGAAGCCATGAAATCCATGGGAGAAAATTTGTCAAAACTAGAAGCTGAAGAAATGATAGTGGAAGCGGACAGTGATGGCGATGGTCAGATAGATTTAAAAGCTTCTGGACAATGTATTGAAGACAATATGAATATGTTTAAAAGGAAGAATACAACAGATGAGGAGGACTTGCCTCAAAAAAGAAATGCAAGTATCAATGAAAACAGTGGAGACGATACAGATGATTTATCTGTCAACCAACAACCAACTACTTCTCCGTATAAAAGATTCTTTGGCAAATTCATTCCAAACTTGTCTTGGTCAAAAACTGAAGAACATATATCAGAAAAGGGAGATAATCCTGGACAAATTATAGCAGATAAAAGTTCAAGTCCTTCGGTGTCAGGTAGAAATAGTTTATCTCCTAGGAAGGCAAGCTCAATCATAACAAATAGTAAAGGTACAGTAGTACTTGTTGGGAAAATAAAACTTAAGAACAAATGGACCAATGATTTGTTACAGTCAACATCAGAGGATTATAAAACCATGACTACTAATTATATCAAGTTGATTGATGATCTTCTACATAACAGTAATGTATCCAAAGTTTACATGAATTCTGTTGTCGTTAAGTACAGTAATATTCCAAACAGTAGTACACGGGCCACCAGAAAGAGTCCTGGCAATGTGATGGTACATTCAGAGATGACATTTCATCATACGTACACAAAACTGTTTACAGATTTACAAGAGCTGTGTGACAATGTAGAAGATTTTATTACCCTGCAGTTTTCTCTTGTTGCTATCGAAAAAGAAGAAAATACAAAGGAACCAGATGATGATACAAATAATGATCTAAATGGACTTTCAGATAATAGAAGTGTGGAGGAAAATGCTGAAGATAATTTTGTTGATGCAAAGGAGATGAATGTAGATGAAGTTGTTCAGGATGAAGAACACACAATAGATGATCAAAACAATGAAACAGCATCTGATAAACAAGAAATGGAGGAAGGAACTGTACAACAGGAACCAGAAAGACAGGGAAACAGTGGTATTGGGACAGGAAGTCAAGACGACAGTGGTACTGGGACAGAAAGTCATGAGAAGAGTGGTACTGGGACAGGAAGTCAGGACAACGTTGATACTGGGACAGGAAGTAGGGATACAGAGATGATTGAAGTAATAGAAGAAGAAAATATAGGAACATCAGATGGGAAAGAGACAAAGGATGAAGTGTCGACTGCTGATGGAGAACAGATAGAGATAACTGTCGGGGATGCTGGAGAGGGAGAACAGATAGTAGTTGGCAAAAAGAGGATATCAGATGTTGTCAGCGAGCCTGTAGATGTACATGTAGATGAATACAAAAAAGGAAAAGCTAAAACTAGAAAAGTGGACTCCAAAAAGAATACACCAAAACAGAAGTCTTCTACAGGTAGAAAAGATCAGCCATCAGGTAGTGGTCTAAAGTCAAAGCCAATAATAACAAGGCATGTTCAGCAGAAAGAAGAATCAGACTCGGATAATGGTAGAGTACCATCAGAACCTGGTGTTCCCACATCTGTAGCCAAAACATCTAATGCCATTACGTTAAAATGGAGTCGGCCAAGGAAAGGTTTTAAATCGGTCGACCATTATGAAATAAAATACAAAGAATGTAAGAAAGGAAAGGGCAAATGGATATCAGTGTTGTCAGAAGGAGCAGAGAGAACCGTCAAGGTGAAGGATTTAAAAGCTGAGATGGAGTATGAGTTTAAGGTTCGAGCTGTAAATGAAGATGGTGAAGAAGGACCATTTTGCCAGCCATCAGTAAAGTTATCTACTGTCACATCATTAGCAAGGTCATTGATCCCTATGGCCAATCTGTTAGAAGATGGCCACCCTAAAGTTTACAAGCTGCCACTAACTAAACATGTTGATACTGTTAATGCCAGAGCTAAGACTAGGAAGTGTGTATTTGGTGTAGCACCAGAGAATTTAAATATGAGAGAGAAGACAATCATGGTGATTGGAGCTACAGGTTCTGATGCTAATGAACCTCCAGTCCGAGCAGCACTCAAGGCAGCTAATGTACCATATCAAAAGTCTTTTAAATTTAATAATTCTGCATTGTATGCATCACCTGAAAATCCTGAAGAGGCAGAAATGGGAAATCTCTTTTGGAAAATGGGGAAAGAAAATTTTAAGATATTCTTTGATGAACTAAAAACAGTGGAGTCTAAAAGTTTATTGCTTACATCAGAAGTATTGCAGCTGAGAAAAAGGATTGAAGCAACCATTCAAGGATTACAACAACAAATAGCTGATGGCATGAACAAGCTTAATACTATCAAACAGGAGAGAGAAATACTGAAACGACATAAAGCTGACATAAAAGCAAAGAAAGACTTCACGTATGAAGTTGACGAAGTTCATATGTACCAAGTTGACCTTGAACTGGGTGTGTATGTTACAAATTGTATGTCATGCAACAGAACATGCCATTTTCCATGTGGTATACCTGATGACCATAACAAACAAAACTGTGCTGCCATTGACCAACAGCTGTGTACAGTATGTCCAATGAATTGTCACTGGACTTTACACAAAAACAATAATTTTAGATTTGATACATATTCAATGAAAGTTACCAAGACTTATGAAGAACTTAAACAAAAGTATGAAATAGCACAGAAAGAAGCAGAAAAACATAAAAGTGTTCTTGGTAAAATAAAAATGGCATTTACATCTCTTGGTAATGATGTTATGAAGATGGTTCATGAAGTCAGGTGCAACATTAACAAGTTAAATGACATTGCACTGAGACCAAACCCACTCAGTGACAAAGATTACATTGATCTGTTGATTGAGAATGAGAAGAATGAAAGAAAGTATGGATGGGAACAAAGAATTAGATTATTCTATAAATTAAGAGAGGAGGCTGAGCTTGTAGAACAGATGCATCAACAGGATTACCAGCCATGGATTCTAGATGATAGCGATGAAAGTGATGACGAGTCATCACAAGACAACACTGATGATGATAAATCTACAGCTGATGAGGAGTTTGATGTAAAAAATATCAAGACAGAGAATCCAGATGTAGAGATGGCATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF01390	SEA	SEA domain	Family	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13833	EF-hand_8	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000082	Domain	SEA domain	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036364	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR050230	Family	Calcium-Regulated Muscle Contraction and Cellular Process	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23048	MYOSIN LIGHT CHAIN 1, 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016460	Cellular Component	myosin II complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_54213-0.10 global RNA-seq network