Gene detail

Detailed information of Bpl_scaf_53775-2.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_53775-2.5	IONOTROPIC GLUTAMATE RECEPTOR	Bpl_scaf_53775	228819	245961	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_53775-2.5

CGTGGTTATAGGACCATACTATACAAATCTAGCGATGATATTAGAACAATCAAAGATACCATATGTTGTTACACAAACCAAGGGATTCGATTATGTGGACGAGACGAGGATTAAGGATAATGTTACCTGGAATAACGTTGTAGAGGTCATGACACCGATGCAGGACCTCAATCAAGCCATCGTTGACCTGTTTCTGGTATGGAAAAATAAAACGGCAGTTGTTATGTTACCAGATGATCCTAAAATAAACGACGTCTGCCAAGACTTGATACAGAAGATGATCGAAAATAAAATATCACCAATCTCTTATGCATTGGATATGAAGTCTGAGGATGACATTCGGAACCAAACAATAGAAGTGTTACGGAATGTTCAGTTACTACAACAGGAAATAATGGTTATTTGCAGCCCTAGAGACCACAAACATAAGCTTATTCAAATCGTTTTGGAGGCGGCGAAATCATTTGGAAACATCATCGAAAATGAAAAGAACATTTTTATTTTTCACGATACGTCTTTATTTTTCGAACCATTTAACCAAGGATCAATGTACAGACAAGGTCTTTTTCAAGCTAAGTGTAAATTACTGGCATATCGTTACAAAGAAATAGGACCTGGGACGAAATACCTTAAAAATTCATACGAAGCCACAGCTACTGACACGGCACAGCTCATACAACAGTCCCAAAAACTTTATTTACAGAAAATCAGAGGATTGAATGAAGACTTACAAATGTTCAACAGGACTAGACTCGTCGAGGCGCTACGAGAATCAATACTGTACAATGGACAAACTGGTTTGGTCCAATTTAATCCCGAGGGGAAAAGAGTTAATTATTCTTACCAGCTGTATAATCACGGAGGTACCTCCCTATTTAGAAAGATTGGTGTATGGCGTCCGTTGGGAGAAACTACAGCGGAACGATTTGTGATGATCCCAATAAACGAAACAGATGACAAATTTACACGTGGTATATTTCCAGACATAGTTAAAGTTGTCGTTGTCATGGAAGAACCATTTGCTATGTGGAAAACTGGTGAAGTAGGCGTAACATTGGAAGGTTTTACTATAGATCTTCTGAATGAGTTATCAAAGGAGTTGTCATTTAAATATCAAATATATACAAGTCCTAATAACGCATATGGATCACAGAAGGATGGTAACTGGAATGGGATGATTGAACAAGTGCGAAAAGGGAATGCTACCCTAGGTATGGGAGCCATATCCATCACTTCTGAACGTGAAGAAGTTGTTGATTTTAGTGTAGGTGTTCTTAGTACCGGAGTCAACATGTTAATTTCAAAACCCGCAGAACAATCGTCAATATTTCAATTTATGCGACCATTTTCTTTGGAACTATGGATGGGAATAGTGGGAGCGTCCATTTTCGTTTGTCTTGTATACCTAATGCTAGATCTTGGAAATCCTGACAAACAATTTATCGTTAAGGAAGTATTGTGGTTTTCTGTTGGGACATTATTAATGAGGGGAACAGATTTTTCCCCAAGACCAAGTTCTCAACGCATATTAACAGCTGGGTTCACTTTCTTTGTTTTGATCACTGTGTCAACATACACAGCAAACATGGCTGCGTTTTTAACCAAAGTTAATCTCGATCAACCAATAGAGTCCTTAAAGGAATTAGCAGAACGATCGAGTATGCAAGTAGGCACAATAAATAATTCAGCAACAATGCATTTTTTACAAACTTCAAACGAAAGTAATTATAGAACAATATGAAAAAGAATCTTAGAGAGTAACGGATTAGTTCAAAACTACAGTCAAGGTAGAATCAGATCATCAAAGGGTAATTTTGCCTTTATTTATGATTTTCTAATCAATTCATATTTTGAAAAGAAATATTGCACAACAAAAATGTCCGGCCAGCCAATCAGATTACAGGAACATGGAATAGTAATGAAAGATGGTGATCATGCGAAGACATTATTAAAGTTGAAAGAAAAAAGTTTCATCAGACGTATAAAAAAAAAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05203	GRIK3; glutamate receptor, ionotropic kainate 3	-	Neuroactive ligand-receptor interaction	ko04080	PMID: 28812709
K05203	GRIK3; glutamate receptor, ionotropic kainate 3	-	Glutamatergic synapse	ko04724	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_53775-2.5 global RNA-seq network