Gene detail

Detailed information of Bpl_scaf_53774-0.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_53774-0.7	NUP107-RELATED	Bpl_scaf_53774	104393	162151	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_53774-0.7

ATGTTGGACGAGAGTGTGGCATCTCCTAGAACTTTTAGGTCAGGTTTAACTTCCAGTTCATCCAGAAATTCACCTAGAGTTTCTCAGTCTAGTGGAGCCTCCATTTTACCCAGAACTCCTGGAGGAAGTCTGAGATATACATCATATACACCAAGGTCAGTTGATGTGTCAGCCATACTTGGTCATACTCCAAGTAATACTCCACAGAGACCAGGCAGTACAAACCAGAGTATGTCATTTACACAGTATCCTGGACACAATATGTCAGGAACTCCGTTTCTGGAGGAGATGACAGAAGAAATAACAACAACAAATATTGGTCTGTTATTAGAAGAAGATCCAGGACTCTTAGGATGTAAGGGGCTATTCCAGGATTTTATGCAGATAATGAAAGCTAACCCTCTAGACACTCAGTCCTTTAACTTATTACATGAATATGAAAGTGTTTGTCATGAACAGGTGACATTGTTAAAGAAAACATTCCGTGGAGCAACAAGGGATTCAATTTCTCAACAGAAGTATGCCTTGTTACATTTACTGAATGAAGAGAGAAACACTTGGAACTTAGTTAAATCTCTGTTTAAAGATCAGTTGAGAACTGAACAAAGAGAAGCCATTGATGAAGAAGATATGAATGTTGATCAGGGTATTCCATTCAACAAGAGTGACAAGGATAATGTAGATGCTCTGTTTGACAGACAGGCCAATGTTAGAAGTTGTCAGTGTGTTATTGATTGGTTAGAGAGCTGTGCTCAAGAGAGTATAAATCACTATAGAGAAAACGTACACTTCTTCTCTGACAGAGCTGTTGCATGCGAGAACACACTAAGTAAACTTCAGAAGAAAGAATGTGGTATATCTTTTGGTAGTGAAAGGCCTATGGTAGATGAAATGGACCCTGATGCACCAGTAAGACAAAACAAACTCCTAGATGACCTGGACAAAGATGATGAAAGACGTCTGCTACAAACACTTTTCCTATGTTTACGTGGTGGAAAAGTTGATGAGGCTCAAGAAATGTGTAGAACTCATGGTCAGTCCTGGAGAGCAGCTACACTGGAGGGTTGGAGATTACATCACGATCCTAACTTCTCCAATGTGACGGAGGATGGAAGCTTAGCACCAATACAAGGCAATATGTACAGAGATATTTGGAAAAGTGTTTGTTGGAATATGGCTCAGGAACCTAAGTTTGATATCCATGAGAAAGCTATGTATGGTGTTTTAAGTGGTAACCTAAGAGCTATACTTCCAGCATGTAAATCATGGTCAGATCATTTGTGGGCACATTTTAAGGTGGCAGTGGATGTCTGGGTGGAACAGGAAATAAGATTACAACAATCCACACCTAGAGCAATGGAGAATCTTCCGCCAGAATATTGGGATCAGTTGACTGACTCAGACAATATCTTTAAGAAGATAGAATCCTATGAAGATGTAAGATCAGAATCTCAAGAATGTTACCATGTTATTCAGAAATTAATAATCCTCGGAAATATTGATAAGTTACTAGAGATTATGACACAATGGATACACACAGACAGAGCCAATCTCAACACACATCTCATCAGGTTTATGGCACATCTGGTTCTTTTCCTCAGAAATACAAGACCTGGCTTTAAGGAAGACTATGTCAATGTTATACTAGAAACGTATGTGGAGGAGTTGATCCAAGGAAACAATAAATTTCTGGTGGCTTATTACATATCAACATTACCCTCATATTCACAAGTCATGTGGTGTGCCAAGTTTCTAGAAGGTGTGACAGAAGCAGAAGATAAACAGCAGTGTTTAGAACTTGCTAGAGAAGCTGGACTTGATATTCCAGCCATTACTAAAACAGTTGTAGAAAACATCCGTAGTCATGACGTCATTGATTTCACTCAAAATTTAGAGAATATTAATACAGCAATAACTCAGGAAGACAGGAAGAAGATAGAGTCCATTGATTGGTTGGTTTTTGATAGTTATCAGAGGTCAGAGGCCATAAAACAGGCCAATGCTATAATGAGGTCATTTGTTGCTGTAAAGAAGCTAACAGCTGCCAAAGAAGTATTAAATAAGCTACCACCAGATTCTATAGATATTGTGATCGAAGTGTGGACAAGGCAGACTGGAACAACAGAACTATCCCCAGAAGATAACAATTGCCTCAGAGAATTCATTTGTCATAAAGCTTACTTAGATGCTATGGACAGCTTTAATGACTGGTTTAACACATACCATCATACACAGCCCACTAAACCTACAGTATTACATGGTGCAACATTTACAGAGAAAGTCGCTCATGAACATCGTGTTAAACAATACGAGGCAGAAATGGACAGGTGGCATCATAACCTCATATCACAGACTAGGATGACTAAGAAGAAGATGTACAATGTTCTACTGTTTACAGATGGTGGATGGATGGTTGATCAAAAAGAGGTATCCTCGATGATCGAAGAAGATCCAGATGAGAACCGTCAACAACAGATGATGTTGCTACGACAACTAGTATTACCTGGCCTTTGTTTCCTTCTACACAATATTTTACATACAAGTCAACAGTACGCTGAATGTTTACAACTGGCAGACATTATTGCCTCTGAACAACATCAACTTTATAAGATCAGAATAAAGACACTTTAG

Transcript

Bpl_scaf_53774-0.7

AAAACAGCTTTACAGATGTTGGACGAGAGTGTGGCATCTCCTAGAACTTTTAGGTCAGGTTTAACTTCCAGTTCATCCAGAAATTCACCTAGAGTTTCTCAGTCTAGTGGAGCCTCCATTTTACCCAGAACTCCTGGAGGAAGTCTGAGATATACATCATATACACCAAGGTCAGTTGATGTGTCAGCCATACTTGGTCATACTCCAAGTAATACTCCACAGAGACCAGGCAGTACAAACCAGAGTATGTCATTTACACAGTATCCTGGACACAATATGTCAGGAACTCCGTTTCTGGAGGAGATGACAGAAGAAATAACAACAACAAATATTGGTCTGTTATTAGAAGAAGATCCAGGACTCTTAGGATGTAAGGGGCTATTCCAGGATTTTATGCAGATAATGAAAGCTAACCCTCTAGACACTCAGTCCTTTAACTTATTACATGAATATGAAAGTGTTTGTCATGAACAGGTGACATTGTTAAAGAAAACATTCCGTGGAGCAACAAGGGATTCAATTTCTCAACAGAAGTATGCCTTGTTACATTTACTGAATGAAGAGAGAAACACTTGGAACTTAGTTAAATCTCTGTTTAAAGATCAGTTGAGAACTGAACAAAGAGAAGCCATTGATGAAGAAGATATGAATGTTGATCAGGGTATTCCATTCAACAAGAGTGACAAGGATAATGTAGATGCTCTGTTTGACAGACAGGCCAATGTTAGAAGTTGTCAGTGTGTTATTGATTGGTTAGAGAGCTGTGCTCAAGAGAGTATAAATCACTATAGAGAAAACGTACACTTCTTCTCTGACAGAGCTGTTGCATGCGAGAACACACTAAGTAAACTTCAGAAGAAAGAATGTGGTATATCTTTTGGTAGTGAAAGGCCTATGGTAGATGAAATGGACCCTGATGCACCAGTAAGACAAAACAAACTCCTAGATGACCTGGACAAAGATGATGAAAGACGTCTGCTACAAACACTTTTCCTATGTTTACGTGGTGGAAAAGTTGATGAGGCTCAAGAAATGTGTAGAACTCATGGTCAGTCCTGGAGAGCAGCTACACTGGAGGGTTGGAGATTACATCACGATCCTAACTTCTCCAATGTGACGGAGGATGGAAGCTTAGCACCAATACAAGGCAATATGTACAGAGATATTTGGAAAAGTGTTTGTTGGAATATGGCTCAGGAACCTAAGTTTGATATCCATGAGAAAGCTATGTATGGTGTTTTAAGTGGTAACCTAAGAGCTATACTTCCAGCATGTAAATCATGGTCAGATCATTTGTGGGCACATTTTAAGGTGGCAGTGGATGTCTGGGTGGAACAGGAAATAAGATTACAACAATCCACACCTAGAGCAATGGAGAATCTTCCGCCAGAATATTGGGATCAGTTGACTGACTCAGACAATATCTTTAAGAAGATAGAATCCTATGAAGATGTAAGATCAGAATCTCAAGAATGTTACCATGTTATTCAGAAATTAATAATCCTCGGAAATATTGATAAGTTACTAGAGATTATGACACAATGGATACACACAGACAGAGCCAATCTCAACACACATCTCATCAGGTTTATGGCACATCTGGTTCTTTTCCTCAGAAATACAAGACCTGGCTTTAAGGAAGACTATGTCAATGTTATACTAGAAACGTATGTGGAGGAGTTGATCCAAGGAAACAATAAATTTCTGGTGGCTTATTACATATCAACATTACCCTCATATTCACAAGTCATGTGGTGTGCCAAGTTTCTAGAAGGTGTGACAGAAGCAGAAGATAAACAGCAGTGTTTAGAACTTGCTAGAGAAGCTGGACTTGATATTCCAGCCATTACTAAAACAGTTGTAGAAAACATCCGTAGTCATGACGTCATTGATTTCACTCAAAATTTAGAGAATATTAATACAGCAATAACTCAGGAAGACAGGAAGAAGATAGAGTCCATTGATTGGTTGGTTTTTGATAGTTATCAGAGGTCAGAGGCCATAAAACAGGCCAATGCTATAATGAGGTCATTTGTTGCTGTAAAGAAGCTAACAGCTGCCAAAGAAGTATTAAATAAGCTACCACCAGATTCTATAGATATTGTGATCGAAGTGTGGACAAGGCAGACTGGAACAACAGAACTATCCCCAGAAGATAACAATTGCCTCAGAGAATTCATTTGTCATAAAGCTTACTTAGATGCTATGGACAGCTTTAATGACTGGTTTAACACATACCATCATACACAGCCCACTAAACCTACAGTATTACATGGTGCAACATTTACAGAGAAAGTCGCTCATGAACATCGTGTTAAACAATACGAGGCAGAAATGGACAGGTGGCATCATAACCTCATATCACAGACTAGGATGACTAAGAAGAAGATGTACAATGTTCTACTGTTTACAGATGGTGGATGGATGGTTGATCAAAAAGAGGTATCCTCGATGATCGAAGAAGATCCAGATGAGAACCGTCAACAACAGATGATGTTGCTACGACAACTAGTATTACCTGGCCTTTGTTTCCTTCTACACAATATTTTACATACAAGTCAACAGTACGCTGAATGTTTACAACTGGCAGACATTATTGCCTCTGAACAACATCAACTTTATAAGATCAGAATAAAGACACTTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04121	Nup84_Nup100	Nuclear pore protein 84 / 107	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007252	Family	Nuclear pore protein 84/107	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13003	NUP107-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14301	NUP107, NUP84; nuclear pore complex protein Nup107	-	RNA transport	ko03013	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_53774-0.7 global RNA-seq network