Gene detail

Detailed information of Bpl_scaf_53773-2.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_53773-2.7	E3 UBIQUITIN-PROTEIN LIGASE TRIM37	Bpl_scaf_53773	224618	248606	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_53773-2.7

ATGGCGGATAATGCAGAATCGAGTGAAAAACAGGACTTTGTCGGAGAAAAAAAGAAATCACACGGCGCTACAAGACACTGTTCATACGGAACATGCAATAGCGATAGTAGATATTCAGATCGTGAACACATGAAATGTGTCTTTTGGATCCCGTTTCCCAAACCAAAGCGAAACTTGGAAAAATGTCAACGTTGGATTCGGGCATGTGGTCGTGAACTTTTTACTGTGGAAAAAGTCACACGATGGACGTATATTTGTTCAAAACATTTTGTAGGAGGGCAAGGTCCTACGGAGCAACACCCGGACCCAATACCAGCAACATATACACCGTTTCAGGCAGAAAGGTTCTCTAGAAAAAGAAAACTACCTACTCCTAGAGCTGCTCCAGTATCAAAGAAAGTTTTATTAGAAGTTTCAGAGGCTTTATTGTCAATGCAAGATGCAGTACCACAACCTACAGCTACTTGTACTTCTGACCAACCTGTCAGTACTTCTTCTGACACTACATGCAGTATTTCCAATGACCAGCAAACAAGCACCCTGAGTTTGTCTGAGGTGTTCAGATGTTTCATCTGTATGGAAAAGTTGAAAGATGCCAGGCTTTGTCCTCATTGTTCTAAGTTGTGTTGTTTTAGTTGTATAAGAAGATGGTTAACAGAACAGAGATCACAATGTCCACACTGCAGGGCATCTTTACACATACATGAATTGGTGAATTGTCGATGGGCAGAAGAAGTAACAAACCAGTTAGATTCTTTAAAAGAATATTCACCATCAACATCTAAAAAGGAGGAACCTGACAAAGACAAATGTGATGAACACCATGGAGAAAAGTTAAGTGTATATTGCTGGACTTGTAAACAGTGTATATGTCATCAGTGTGCTCTTTGGGGAGGAACTCATTCTGGTCATACTTTTAAACCATTAGACGGTGTTTATGATGAACATGTAAAGAAAATAACAGATGAATTAAACCAACTAAAGAGACGACATGTAGAACTGATTAGTCTAGTCCAAGATGTGGAGAGAAACATTGAAAGTGTTAAAACAGCAAAAGATGAAAGAGTACGAGAGATACGGAATGCTGTAGAACTAATGATAGCTAGATTAGAATCTCAACTTAAATCTAAACTACTTACATTAATGGGTCAAAGAGGTCATCTAACACAAGAAACAGAACTATTAGAGTCATTAATACAGAAAGTCAACCAAAAATTAACAACGTGTGGTAAAAATGAACTTATCAACATTAGTTCTGAACTCCTTGAGATGTTTAAAGAAGTCCAAAGAAAACCAATGGCTTCTTTTGTAACTGCTGCTGTGCCAGCTGATTTTACAAGTGAAATCGTGCCACCATATGACACCAGTACGTTTGTAATGAAGAACTTCAGTGTGTTACAGCAAAGAGCTGACCCTGTCTACAGTCAACCATTAAATGTCTCTGGTTTAAGTTGGAGACTTAAAGTCTATCCTGATGGTAATGGTGTAGTGAGAGGTAACTACCTCTCTGTTTTCCTGGAATTATCAGCTGGTCTGTCAGAAACATCCAAATATGAGTACAGGGTAGAAATGGTTCATCAATCCAGTCGTGACTCTAGTAAGAACATTGTACGAGAATTTGCATCAGATTTTGAAGTTGGAGAATGTTGGGGATACAACAGATTCTTCCGTTTAGATTTACTTGCCAGTGAGGGATATCTAGATACAGAAACAGATACTTTAATACTGAGATTTCAAGTCAGACCACCAACGTTCTATCAGAAATGTAGAGATCAACATTGGTACATAAATCAGTTAGAATTCTATCAAAGCCAGTATATGACACAGTTAAATGATATGAAAGAGAAATTATTACTTATTGAAATGTCAAGATCAATAGGAGGTGCCAAAAGGGGAACCTTATCTGAATCTCCTCTCCCTCTTATTGATCCCCATGGTGGAGATAGTCCATCTACACAACACCCCATACTGCACCCCAAACCTTTACATCCTGGCTCTGGATCAGAGATTGAAATAGAACATTCAGACAACGACAATGGAGAAGTCACATCAGATAACGACACGACGGATTCTAATGAGGGTTTAAGTGAAGGAGATATTGATGATTTAGAGGATAACAGAATGATATTAGAAGATCATCTACTTGTTTCAGCAGAAAATAATGATGAAAATGATATAGATGAGGAAACCATGTCGTTAGATAATGATGTAGAGAACAGTTTGAGGTGGGAGGAAAATGATCTTGACAGACTTGGAGCTCACGGCAGTAGTCATAAATCTGTATCTAATATTACTGGTGCAGAAACC

Transcript

Bpl_scaf_53773-2.7

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	THAP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00917	MATH	MATH domain	Domain	Interproscan
PF05485	THAP	THAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR006612	Domain	THAP-type zinc finger	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR037299	Domain	TRIM37, MATH domain	Interproscan
IPR053003	Family	TRIM/RBCC E3 ubiquitin-protein ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36754	E3 UBIQUITIN-PROTEIN LIGASE TRIM37	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016235	Cellular Component	aggresome	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032088	Biological Process	negative regulation of NF-kappaB transcription factor activity	Interproscan
GO:0046600	Biological Process	negative regulation of centriole replication	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0051865	Biological Process	protein autoubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10608	TRIM37, MUL; tripartite motif-containing protein 37	EC:2.3.2.27	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_53773-2.7 global RNA-seq network