Gene detail

Detailed information of Bpl_scaf_53547-0.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_53547-0.7	TRANSLATION FACTOR	Bpl_scaf_53547	52647	86579	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_53547-0.7

ATGTTACTTATGAGAGCGGCACAGTTCACCTTTAACAGAGACAAAAATGTTGATTTGGCACATTACATGGAGGAGGGAATCCCTGAGGAGGATGAGGAGGACAGTGATACAGACCAGCATTCATTAAATAATTCTGCAGGAACTCCTAGGTTACAATTAAATGAAACTGATCAAGATGCACCTAAACCTCAAAGACAACCCAGAGAATCCAGACGTAACAGACTACAAGACTCAGAATCCCCAAATGATAAAAATCTTTTATTATCAAATAATTTAAAACACTCTTTAGGAATTATGAAATATGGTGGTAGTTGGTCTTCTGAAAGTTCTATTGAAAATTTAAGAAATTCTGGGCTTAAGTGTGGAAATTCTAAGTCAGTTAATTACTCATCTGCTGGCTCGTCTGAATGTCTCTCTTCCACACCTGATGTACATGAGACAACATATATTAGTAAGAGAGAAAAATATCCATCCACTGGATCATCAGATTGTTTATCATCAACACCTGAAGACACAGTACCTATGTTTTCTGTAACTACCACAAAACAATCAGAAAAAGATCCTAATCCTACAAAGTCAGTCAATAATTCATTATCATGTAAACAATTTAACAAACAAAATTGTTCTCAACCGATCAATCAGAAATCATCTAATAAACAGCCCTCATTATCACAGTTGGCATTTGAGGATTCAGTATCTAATAAGCAGCCCTCATTATCACAATTGGCTAATCGATACTCGTCCACTAAACATCAGCATTCTTTATTGCAAGCTACCAGTCATAATATTGCATTGGATACTTCTTTGAAAGAACAAGCAATACCAAGTTCTACACAGCAGCAATCTTTAGGTGATTTAGAAAATAAATTATCAAACATAGGAATTAATCACCCAAGTAGTAGGCAGCAGCTGACCAAGGAACATACATCAGACACAAGACAACCATCTTTAGTTACAACATCAAAGCATCCAGTTGATGAAAAACATGCATCTTTATCAGCATTAGCTTGTCAGCAGTCTGTGGTATTTAAAAATAGCAATTCGTCAGGAGGAAAAGCTAATACCCGAACATCAGATGCACCAAAGCAGCCTTCTTTAGCAGAATTGGCCAAAACACCATCCCAAGGAATCGGAAATCAATTATCTTTAGCGGAAATAGCAAAAACACAGCCTCCTGTAACAGCTAAGCAACCATCTTTGTCAGATTTAGCAAATACCGGTAAACAATTATCTGATATTCAAAAGCAACCATCATTAGCAGACTTAGCATCGAAATCAAGACAGCCAAACGTAAAACAAGTAACAAATATCAAATCTTTAGCAGAAATTGCCAATAATCAAAACTCGGGAAAAATTGTGCCATCATTGTCACCCAAATCTAAACAGGAAGTGGATCCATCTTTATCTTTATTAGCCAATAAACATTTGTCAAGTACAGAGAATGTCATATATGTTGGTACTAGTGAAAGGGAAAATTTAGAGAGCAATTTATCCAGCTTAAACATACATGAGCAGAAAAATGTAAAAATATCGCTGGCTGATTTGGCTGGCAAGAAATCTCTGAAGTATTGTCAGAAAGTTACAAAGGCAATTGTGAAGGAAGAAAAGCCATTTCAAACACAAATTCTAAATGACAGTCTAGATCGTGAACAAATGCCTGAACAGATATTTATTGAAGAAATAGGCAACAGCATGGAATATTTTGCAGTTAACCCACCAAGTGTCACACTAAAAGGTCCACCCAAAGGGAGACAATCTAACGTTGAAAATAGTGTTGATAAAGTAACAAATAATGTGACTAAATTAAATAAAACAGTACCACAAGGAGGTGATAATTCTACACAAACATTATCAGATAATGTTAACGTTAGTCTGAATATAGATACACAAACAAAACTGGACACACTGAAAATGAAAGAAGAATATAGTAAAAGACAAGCAGACAAGGATCAGTTAAATATGGTTGTCATAGGTCATGTAGATGCAGGGAAGAGTACATTGATGGGGCACCTGCTATATCAGTTAGGGGAGATAAATCAACGAATAATGCATAAATATGAACAGGAATCTAAGAAGATGGGTAAAGGATCATTTGCCTTTGCCTGGGTGCTAGATGAAACTGAAGAAGAAAGAGCAAGAGGTGTGACTATGGACATTGCACAAACGAGATTTGAAACCCCAAAGAAAATAATAACACTACTTGATGCACCTGGACATAAAGATTTTATTCCAAATATGATTACAGGTACAGCACAAGCAGATGTTGCTATATTGGTTGTTAATGCCACCAAAGGTGAATTTGAAACTGGATTTGAATTGGGAGGTCAAACTAGAGAACATGCCATATTAGCAAGATCTTTAGGTGTAACACAGCTGATTGTTGCAGTGAATAAAATGGACACTGTTGATTGGTTGGATAGTAGATATGATGATATTACAAAAAAATTAGGACTGTTTTTAAAACAAGTAGGGTATAAAGAATGTGATATTTCATTTATCCCTTGTAGTGGATTAAGTGGAGTCAATTTAACTGGGAAAATACCAGAACCTAAGTTACAGTCCTGGTATAAAGGCAGTACCTTGAAGGAACAAATAGATAAATTTAAAGTAGTCTCACGTCCTGTTGACAAACCTTTCCGTTTGTGTGTAGGGGATATATTCAAAGGAATGGGAAGTGGCTTTAGTGTAACAGGACGCATAGTATCAGGATCAGTCCAGACAGGGGACAAGTTATTAGTCCTGCCAAGTGGGGATATTGTCTCTGTAAAAAGTATAGGCCTCAATGATACATCAATGGCATGTGCTTTTGCTGGAGATCATGTGACATTGACAATTACAGGAATGGACATGACAAATATTTATTTAGGAAATATGTTGTGTGACCCTGTGTCACCATTAAAAAGTGCTACTAGAATAAAAGCCAGAATTGTATTATTTAATGTGGAGATTCCAATTACTAAAGGATTTATGGTTGTATTTCATTATCAGTCCATTACTGAACCTGCTGTGATAAAAAGACTTAACAGTCAACTAAATAAAAGTACAGGAGAGGTTGTAAAAAGTAGACCAAAATGTCTTTTGAAGAATATGAGTGCTGTGGTTGAGTTGGAGTTTGATAGACCAATTTGTTTAGAACTATATAAAGATTACAAAGACTTAGGAAGATTTATGTTACGGTACAGTGGCCATACAATTGCTGCGGGACTTGTTGAAGAG

Transcript

Bpl_scaf_53547-0.7

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03143	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004160	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009001	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050100	Family	Translation factor GTPase superfamily members	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23115	TRANSLATION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14416	HBS1; elongation factor 1 alpha-like protein	-	mRNA surveillance pathway	ko03015	PMID: 28812709
K14416	HBS1; elongation factor 1 alpha-like protein	-	Legionellosis	ko05134	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_53547-0.7 global RNA-seq network