Gene detail

Detailed information of Bpl_scaf_53531-0.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_53531-0.16	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Bpl_scaf_53531	73292	105045	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_53531-0.16

Transcript

Bpl_scaf_53531-0.16

ATGGGTAATATAAGAAAGTCGTATACTGCGAGAGACAAGCTTAAAATCATCACATATGTAGAGGCTCATGGCAACCGTGCAGCAGGCAGAGAGTACGATGTAGGAGAAAGTAATATTAGACTTTGGATGGATTATAATGGAGATGTAGTGAGTGATCTTCAGCACTCCTTAATGAATGCTCATGATCTGGTTAAGAAAATAAAAGCCATCAACAGGCAACTGAATGCTTCCCACACCATTCTGGTAATGAAACAAAACACTGGCAATGAGCAATTAGCCAAGCATGTTCAGGATATACGTGAAAATTTGGAAGCATTTCACGAAGAAATGATACACCAAATGACTAAATCATTCCAGGAAAAGACTGGCTACCTCAGCACATGTATGCAACAACTAAAGCATGAAGAGACAACAATTGGGCAGCTCTGTAGAGAAACAGAGAATTTGTTGAAACAATGTACAACAACCATAAGTCCTGTACAGGTTCAGAGAGGCAAAACCCTAATGGAAGCTTTTAAGATAATGTCAAGAGAGCATTCTGCAGACATGGAGTTTGATGAAGATGTCATCCATCTAGATTTTATTCCCCTGAAGCCTGTTGAGGACTATTTAACATTTGGCAGTATTCGAATAAGCCAGAATGACAATTCTGTTAAGGCAGATGAAGTTAAACAGACAGACGAAAGTAGACAAACATTATCTCGTTCTAGTCAAACTGAAATACTGTTCAAAGACTATTGCCCTTTCTGTGGACGAACTTACAGTAAGGGCAAGAAAGACGTAGATGTTCAAGCTTGTGTCCTTGGTGTAGACTGTGCTTCACAGTCAGATGTAGTCGAGTCAGATACATTCTGGCAAAACAAATGCTATAAAGGAGAAATGTTATCTATGGATTGTGTTGATGAGCAAAGGAAAGGTAGAAAGCTATACATGGGAAGTACAAAATCAGGTCAAGCTCCTAATGTAAGCTTGATTCACAATGCACAAATTGATTCGAGCAAATATCCCTCTTCAGATGAAAGTACAACTTCAAAAAGTTCCCCAAGCAAGGCTTATAATGGTGTAGGTAGTAAATATGAAGATGCACATGTAAGAAGGAGAAAGCCAGTGACTGGTAAAAAACTAAAAAATGTGGATTTCCAACATTTAGAGGAGGTGTGGAATAGCAGTGATGATGAAATGAAGGAAGCTACAAGGAGTCTTTCTAATCCTCTAACATTTGCTGCAGCAGTCAAACGTCAAGAAAAAGTTGATCAGCAGAAAGGTGAAATTAAAATGTCAATGATGCCATCGGTGCCAGCTGTCGCCAATAAATCTTCAAAGAATTACATTCCACCACCACCTCCAGGATTCTCACAAGAACAAATGAATGGACCATTTGTTAAAGAAAAGATTAGAGTAAAGAAACCAATGTTAGCAGCTCAAAGTTTGTCTATGTTGACTGGCCTTGTTAAAAATGCCAAAGCTGAGAATATTATACACCCTCCTCATGTAAACAGGACAGAAAGTCAGATTAACTCTGATTGGTGGGGAGTAGCTCCTGAAGTACCTAAAGTACAACCACAAATATCTCCAATACAGTTGCCTAAAGAAAGTGTTGTCACAGAAAAGAATGGAGAATTAGTTGTTGGTGTTCCAGATTGCTGGAATGATGAGAAAGAAGACAGTGTGTCACGTAATTCTGTTACTAGTACACCCAAAATTAAGATGGCAAGTGAAGCATCAAGGTTTAAAGGTCAACCAGCAGTTGATGAAAACGAAGAACTTTGTTTAAGGCGTCCCTCTGTCAGTTTCATTACCTCTCCTCGAGTACCAAAGATCCATTCTAAAACAGATGCTAATAATAACAGTGACAACATGCATTTAGTTACTGTTATGACTGAACCAATCATCAGAACTGTTAAAGTTGAAGGAAACCAATCAGAAAGCTTGGAAGGTGTACACAGTGTTAAAACTGAAGTGAAAAATGAACCCATGGAAATTGATATTAAGATTAAATCAGAACCTGACTGTAGTAGTATTGTAGATTCTGGTTGGGAGGAAGATTCAGGTGTCGCAGAGAATAAGGAATCGGCTAAAGATTCTAGTTATTGGATTGAAACACCACAGAAAAGGGAAACAACTACATTTATAAAAGGCTCGGAGATATGGACAGAAACTATCAACACAGAGGCTACCTCTCTATCGAAGTGCCAAAATGTTTTTAAAAAGGAAAAAGGTTATCGAGCGAGAGATGACTGGGAACCAAAGATGGATACCCATAAAGGGAAAAATCAAATTTATAGTGTGAAAGATGTAACAACAAAGTCTGTTTCACAGAGTGCAAAATGTCATGGTGCAAACGATGATGATTGGGAAAGAAAACCTAAACCAGTTGTGACAAAACCAAAGGTGACTAGATGGGATATGCCACCAAGTGAGCAGCTAGTAGTAACAAATTCAGGAGATGCCAGAAAGGTGACCAGTGACAAGGCTGTTACAGGTGCATCAATCAATTCCACACCTGCACTTAGTCCTGTTGCTTCATATATAGAAAAAATGTCAAAAGGAACAGTATCCAAGATATTATCTCCCTTGCCAGCTAAGTTGACAATGAAGATTGGAGAACGGGATGGTTTACGTTTTCCAATAGGGGTGGCCAGTACCAGTAAAGGTGACATAGTTGTAGCTGATACTGGAAATCATTTGGTTAAAATATTTACATCTGAAGGTAGACTTAGATTGACAGTTGGAAAAACGCTGAAACCTACAATGCAGAGGCCATCAGCGATCGTAGTGAACAAAAAAGATGAAATGTTTGTTAAGGACGATCGGTGTATAAGAGTATTTGAGACTGTAGAAGGTCATCTTCTTAGACAGATGGGGATAAATCAGCTATCAATGCCATATGGTTTGAGTTGGACTTCTGAAGGTCATCTTCTTACATTAGATGTGGACAAACGAAATCCTCGTATTGTGATATTTTCCCAGAATGGAGATTTAATTAATACTTTCCCTTACATTCCATTACAAGGAAAAATTCCACAGACCAGGTGTAGATTCTTAGATGTTAGCCAGAATACTCTTGTTGTTAGTGACTTAGGTCGACATGAGATTTATGTTACAGATCTGAAAGGGAAGTTAAAAACTTATTTTGGAAGAGGTGGTCATGGAAACGGGGAGTTTTATGAGCCGTCGGGGGTTGTTGTTGATACCAGTGGCTACATGATGATAGCAGATAGCAAGAACGATAGAATACAGATTTTCCGTCCAGATGGAGGATTTGTCTGCATAGTAGCATTTTCTGAGCCAATAAAGAGACCTTCAGATATACATTTAACAAGTGATGGCCGTCTAATTGTTGTTAACTTTCTGAACCATCAACTTAAAATCTACAAACTTGGAGATTCAGGAGTCCAGTAGTAAATTCTTAATTAATTATATAATGTAATTAGTCTCTGACGGTGCATTAGTAGACTGATGTGGTGCTGATGACTTGGAAATTTACTCTGCCTGTTAAATCTGGCACGGTGTCCATGGCAATTTACTCTGCCTGTTAAATCTGGCACGGTGTTCATGGAAATTTACACTGCCTGTTAAATGTGACAGTGTCCATGGAAATGTACACTGCCTGTTAAATGTGACACTGTCCATGGAAATTTGCTCTGTATGTTAAAAGTGACACTGTGTCCATGGAAATTTACTCTGCCTGTTAAATGGGACACTCTATCCATGGAAATTTACTCTGCCTGTTAAATGTGACGCTGTGTCCATGGAAATTTACACTGCCTCTTAAATGTGACAATGTCCATGGAAATTTACACTGCCTGTTAAATGTGACACTATGTCCATGGAAATTTACTCTGTATGTTAAATGTGACACTCTGTCCATTGACATCTAAACTGCTTATTAAATGTGGCATTCTGTCCCTGGATATTTACACTGCCTGTTAAATGTGACACGGTGTCCCTGGTAATTATACCCCTGCTCCTTGGAGGGGGAGGGGGTTATACTGCTTTACCTCTGTCCGTCCCAAGATATTTTTCGTTGCATTTTTCTCAGCAACTATTGATGGCAGAAATCTGATATTATACCCCCACTCGTAGAGAGGGGGCTATATTGCAATCACCTTGTCCGTCCGTCCGTCCATTCACACTTTCTTAACAGATATCTCGGCTTCTACTGAAAGAAATGATTTTATATTTGATATATGGCTTTGGCATGGTGACTTGTACCGTGTCTCCGCTTTCCAGGTTTACCGCACATCTACTTCCTGTTTACCGTGCGACTTACAAATGAACGAGTGGGGGTATTCTTAGCACGACGTAGTGTGCAACATCTTGTTTGGTCACAAGCATCATATAGGTATGCCATATTGTGGGAAGCGTTTTTGGACACGTCAGATTCCTACTTCCTGTTTGCCGACTTAGTTGGTTTTTATACACATTGAACATATATGCACATTTTTCTCAGCAACTATTGATGGCAGAAATCTTATATTTGGTCACAAGCTTCATATAGGCACTCCATTTCGTGGGAAGCGTTTTTTGACCTGTCGGATTCCTACTTCCTGTTTGCCGACTTCGTTGGCTTTTATACACATTTAACATATATATACTCATTTTTTGTCGCATTTTTCTCAGCAACTATTGATGACAAGAATATGATATTTGGTCAAAAGCTTCGGATAGGTATGCCATATTGTGGGAAGCGTTTTTGGACCCGTCAGATTCCTACTTCCTGTTTGCGGACTTAGTTGGTTTTTATACACATTGAACATATATTCTCATTTTTTGTCGCATTTTTCTCAGCAACTATTAATGACAGAAATCTGATATTTCATCACAAGCTTCATATAGGTACTCCATATCGTGGGAAGTGTTTTTTGACTCGTCAGATTCCTACTTCTTGTTTGCCGAACAGCAGGGGTATCATAAGTGAGCATTAGCTCACAGTTCATCTTGTTCACACTGCCTATTAAATGTGACATCTGTGTCCATGGAAATATACTCTCCCTGTTAAATGTGACACTGTGTACTTGAAATTTACACTGCCTATTAAATCCGACACTGTCTATGGAAATTTACTCTGCCTGTTAAATGTGACACGGTGTCCATGGAAATTTACACTGCCTATTAAATGTGACACTGTATCCCTGGAAATTTGCACTGCCTGTTGAATGTGACACTGTGTCCCTGGAAATTTGCACTGCCTGTTGAATGTGACACTGTCCATGGAAATTTGCACTGCCTGTTGAATGTGATGCTGTGTCCATGGAAATTTACTCTGCCTGTTAAATGTGACACTCTGTCCATGGAAATTTAAACTGTCTGTTAAATGTGTCACTACATGTCCTTGGAAATTTACATTGTCTGTTAAATGTGACACTGTCCATGGAAATGTACTCTGCAGTTAAATGTGACATGGTATCCATGGAAATTTACACTGCCTGTTAAATTATGATTTTCCAGGAAAATTACCTTTTCCAGTACAATTTTAATAGAAATATCAGTATTAATTTATCATGAATAAACTTAACATTCCAAAGCAAAGACTAGATGATTTATAAATTGTTCATGTTGAAAAAAATAATTTACACATTTTGAATGGTGCAATGAGGTTTCCTGTTGGAATATCCTATTCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12035	TRIM71; tripartite motif-containing protein 71	EC:2.3.2.27	MicroRNAs in cancer	ko05206	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_53531-0.16 global RNA-seq network