Detailed information of Bpl_scaf_53127-2.21 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_53127-2.21CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATEDBpl_scaf_53127216437226414+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14608zf-CCCH_2RNA-binding, Nab2-type zinc fingerDomainInterproscan
PF18345zf_CCCH_4Zinc finger domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR045348FamilyCPSF complex subunit CPSF4-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23102CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0098789Biological Processobsolete pre-mRNA cleavage required for polyadenylationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14404CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4-mRNA surveillance pathway ko03015PMID: 28812709
Influenza A ko05164PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_53127-2.21 global RNA-seq network
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