Gene detail

Detailed information of Bpl_scaf_52975-2.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_52975-2.16	SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2	Bpl_scaf_52975	256236	274237	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_52975-2.16

ACCCGTAGCCCACATAGTTACTGAAAATTCTCCTTCCAAAGTTTTAATTTGAACTTGTTTTTGTTCCCATTTCTTCGAAGATGACGGTGAATCAAAGTTAAATTCTCCAAGCGTTCCGGCACTAACATAGTTTTTCGAACGTCCTCCTTTCTTTTTATTCCCCTTCCCTCTCCTGTATGTGGAAATTTCTTCTGTACAGACTTCAATTTCAGGAGCAGGGACTGGAATATTGTCAATATACACGAGGTTCGGATCACCAACAACTTCCTCACGAGTTTGTAAAATAATTTCCTCCTGTGCATCTGGCAGTGGTTGTAAGGCTATCATGGGTTGTACTTCGATAGTTTCATCTGTCGTTTCTACTGTCTCTATTGGTACTTCTACAGGGATCGACTCAACCTCAACTTCTTGTATTTCAACTTCCGAACCAATGATAGACGCCATGTTTGATAATGGCGGCTAGTCGAAGTTTTCTTTGCTGGGGGTCTGTAGTTAACTATGTCATCACGTGATAAGAAATCGTTCAAGTGTAACACTGATGGTTCGAAGACCATTCGAATTTAAACGGCTCGATTGATTAGCTGCTTTCAATATTTAATTCATGGTTAAAATCAGCTGATTACAATGGGTGCCCAAGTTTCTCAAACGGACTATGAATGGGTTTATACAGAAGAACCCCATGCAACTCGCAGAAAAGAAATTTTAGCTAAATACCCAGAGGTAAAGAAACTGATGGGACATGAACCACGAACAAAATATATTGTCACAGCGATGGTATTATTCCAGATTCTAATGGTGTACCTCATCAGTGATGCATCATGGGTTACAGTAGTTGTATTGGCTTACGTTCTTGGTGGGACTATAAACCACTCAATGACATTAGCAATTCATGAGATTGCACACAATTTAGCATTTGGTCATAGCTATCCATTAGCCAATAGATTTTTAGGTTATTTTGCCAATTTGCCATTAGGAGTGCCTATGTCTGTTTCTTTTAAAAAGTACCATCTTGAGCATCATCGTTATCAAGGAGATGTAGAAAAAGACGTGGATATTCCATCGGAAATAGAAGGACGTTTTTTCAATCGTGCATGGTCAAAGTTTGTTTACCTCTTACTGATGCCATACTTTTACACTTTACGACCTTTATTTATACGTCCTAAACCACTAACAGGACTAGAGTTACTAAACGTGGTCATTCAAGTAGTATTTGATGTGTGTGTTTATTACTGTCTTGGTCCAAAGCCAATATTTTATATGATTGGAGGTACATTCTTAGGAACAGGCTTACATCCTCTTTCTGGACATTTTATAGCCGAACACTACATGTTTATCAAAGGATGTGAAACATATTCATACTATGGGCCATTGAATTACCTGACCTTCAATGTAGGCTATCACAACGAACACCATGACTTTCCTTATATACCTGGATCTAGGCTTTACAAGGTCAAAGAAATTGCTCCTGAGTATTATGATAATTTGCCACAGCATTCATCATGGTGCAGAGTAATGTACAATTTCATCACTGATCCAACAATTGGACCTTTCTCAAGAGTACGTAGGAGAATTCAAGACGAATACAATGAGAAAAAACAGAATGGCGAGAATATATCAATGAATGGTAAACAAAATGGAAAAGCTCATATAGAGTAATGAAAACCTTTGTTTGTGTGGTTTTTTTTTTAGTACAAAAAAAGTATTGTTATAAACATTTTAAAGTGTATACATAATACTGTTCAGTTAATGACAGTTATTCTAGTTTTTATTTTGTGATTCATCCTATAATTACAGATAAGATAGGTGATGTGTTTGAACAAGAAAGAAATTTGCTTCAAGTCATATCCATGCCTTCAGAGCTCCGGAAATTTTCACAAAAGGAGTCACAAATGTAGGGCACATTGATAGAAGTCAGTTTTGTTCTCACATTTTTCATTTTCCATGAATAGAATTTTTTTTCGGTTGTGTGATTTTAAGAATCCTTGATTTTTCCTAAATTAGAAATATTACCTTTTTTTTTGTCATGATTGTCTGGACTAGCAGAGAAAAACTACAAAGATACAAAATTTAATTAATTAAGCTTTTGATGATTAATTAATGCCATATGTGTTGTATTTTAAAGCCATATATAATGTCTACATTTAAACTGTTTTAAAGCCAAGTATACAGTCATATTAAAAGTTTAACCATAGAACACAATAATGCAGTTAGAATTAAATAAGTGTTTCAAGAAATGTAATCACTTTATTTAGGTCATGTCTGGTGAACTCAATTTGAGACACACTATTTATAGGTTAACTTTGAATTATATGGTTCATAATGACAGTATCATAATGGCTTTCATATTGATGTTTGTATGGCTGGGTCATTCATGGTTTTAAAAAAATATTTAACAAATTACATTTTTAAATGATTAAAAAATATCCTCAAGCTCTATTGAATTCTCATTTGAAGTGCACATTTCATATTTATTTATGTACAAAATGTATTGGTAGTTTGTAATCCTATTTCAAGACTCACTCGCCCCAGACAATTGGACTGCAGGCCCCAGACAATTGGACTGCAGACGGAAATTATTGTTAAGGTTTTGGGGGATACAGTTGTGTTTTTTTTAGATTTTATTTGGAGTTACAAAGAAATTATGATGTCAAATAATTACATTTAGATTTTAAAAAACAACAAATATGTAGTAAAATAATTAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCGACCAAATGGATATTACTTGAAGCAATTGTTTTTATAATCATACAATAAATATTTAGTCTTTCATGTTCATTGACTTTCATATCCTTTCTTAATAATTAATCTTTGAATCTCATTAAAAATGGTTACCGCCACGATCTAACTGAAATATTGTTGAAAGTGGTCATAAACCCTCCTCCCCATTATAAATGGGTCCTAATATAATTAAGTTTTTCAAATCTATACATAAATGTAATCAAATATTGGCAGAACGTGTACTGATTAAGGAAACAGTGTATTGCTTCGTCTAATAAAATCGGCCAGAAGAGCGTTTGTTTTTGTGCTATGTTAATCATTGATATTCTTAAAGAGTTATAGAATATTTTTAGAGTCTTTTATCTTAGCCTGAGTACATAACTAATTTACACGATGAATTTATTCACAATTTTACTGGAGAGTTATCTTCTCTTGAGGAAACCTTTTTGTGCATAATTTATATAACTTTTTGCACAGCTAGATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00487	FA_desaturase	Fatty acid desaturase	Domain	Interproscan
PF08557	Lipid_DES	Sphingolipid Delta4-desaturase (DES)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005804	Domain	Fatty acid desaturase domain	Interproscan
IPR011388	Family	Sphingolipid delta4-desaturase	Interproscan
IPR013866	Domain	Sphingolipid delta4-desaturase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12879	SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030148	Biological Process	sphingolipid biosynthetic process	Interproscan
GO:0042284	Molecular Function	sphingolipid delta-4 desaturase activity	Interproscan
GO:0046513	Biological Process	ceramide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04712	DEGS; sphingolipid 4-desaturase/C4-monooxygenase	EC:1.14.19.17 EC:1.14.18.5	Sphingolipid metabolism	ko00600	PMID: 28812709
K04712	DEGS; sphingolipid 4-desaturase/C4-monooxygenase	EC:1.14.19.17 EC:1.14.18.5	Sphingolipid signaling pathway	ko04071	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_52975-2.16 global RNA-seq network