Detailed information of Bpl_scaf_52975-2.13 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_52975-2.13E3 UBIQUITIN-PROTEIN LIGASE RNF8Bpl_scaf_52975333618348322+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00498FHAFHA domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000253DomainForkhead-associated (FHA) domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR008984Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR15067E3 UBIQUITIN-PROTEIN LIGASE RNF8Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006302Biological Processdouble-strand break repairInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0070936Biological Processprotein K48-linked ubiquitinationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10667RNF8; E3 ubiquitin-protein ligase RNF8EC:2.3.2.27
Ubiquitin systemko04121PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_52975-2.13 global RNA-seq network
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