Gene detail

Detailed information of Bpl_scaf_51690-0.20 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_51690-0.20	TRANSLATION ELONGATION FACTOR-RELATED	Bpl_scaf_51690	58195	68005	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_51690-0.20

ATGGTGAACTTTACAATGGAGCAGTTACGACAGGCCATGGAACATCCCAAAAATGTCCGCAACATGGCAGTTATAGCTCATGTGGACCACGGGAAGACCACTCTAACCGATTCCCTCCTGGCCCGGGCAGGCATCATTGCAGCCAACCAGGCAGGTGATAAATGTGCCATGGACACAAGGAAAGATGAACAGGAGAAGGGAATTACCATTAAATCGACTGCCGTATCATTGCTCTATGATGTCGACTCCAAAATCCTCCCCGTCAGTCACCAGAAGGAGGAATCCCACGAATACATCGTTAATTTGATCGATTCTCCTGGTCACGTGGATTTCTCCTCTGAAGTGACGGCGGCGTTGAGAGTAGCTGATGGGGCACTGGTCGTTGTAGACAGTGTTAGTGGTGTCTGTGTGCAGACAGAGACGGTGTTGAGACAAGCCCTGTGTGAGAGAATTAAGCCAGTGTTGATGATGAATAAGCTAGACAGATGTGTATTCGAGACACAATTACAACCAGAAGAACTGTATCAAGGTCTACGAGGTGTTATAGTACGATTCAATGCTTTAGTAGCCACGTACTCTAATGAAGAAGTCATGGGAGATTTAACGGTTGATCCAACGTGTTGCAATGTAGCATTCGGATCAGGCTTACACCGTTGGGGTTTTACATTACGACGGTTTGCAAAAATGTACGCCGACAAATTTGGCGTCAGTGAAGATAAAATGTTGAAGAGATTGTGGGGTGACAACTTTTACAATACAGAGACGAAAAAATGGGGTACAGTGAAGGAGGAAAACTGTGTTAGAGGATTTAACAAGTTCGTTTTAGAACCTTTATACAAGGTACTCCATTCAACAAAATCCCAGGATAAAGCAGAGTTGCTTAACCTTGTAGAAAAAGTTAGTGTTAACTTGACAGCAGAAGAAAAAGAAACAGAAGGTAAAACTCTGATGAGAACAGTGATGAAGAAATGGTTACCAGTTGACGATGCTCTATTAGAGATGTTTGTGGTCCATCTACCATCTCCCTTAGTGGCACAGAAATACAGGACAGAACTGTTGTATGAAGGTCCTCAAGACGACGAAGCAGCTGTAGGTAGTACAGTAATAATGATGGGATCTGGCGTTTCTGGAGGTATCCATGATGTACCTTGTGGTAATGTGGTTGGTCTGTCTGGCATTGACAAGTTTCTGGAAAGATCGGGCACGATATCGACGTATGAGCATGCCCACAACATGAAGGTAATGAAGTTTTCTGTAAGTCCAGTTGTCAGGGTGGCCGTAGAAGTAAAGAATCCAGCAGATTTACCAAAGCTAGTAGAAGGAATGAAACGTTTAGCTAAATCCGATCCTTTGGTACAATGTAGACTGGAGGGAGGACAGCATATAGTGTGTGGTGCCGGTGAATTACACATGGAAATATGTCTTAAAGATCTGGAGAATGAACACGCAGGCGTTTCTCAACCCGTCGTCACTTACAGAGAGACAGTTAGTGACACCTCAGATCAAATCTGTATTGTAAAAACCTCAAACAAACTAAACAGGATATACATGACAGCATCGCCCTTACCAGATGGTCTTGTTGATGATATTGAGAGTGGAAAGGTATCTGCCAGTCAAGATGTCAAAGAAAGAGCACATTATTTGGTGGAGAATTACGATTTTAATGCCACTGATGCCAAGAAAATCTGGTGTTTTGGACCATCAAACTCTGGTCCAAACATGTTGGTAGACTGCACCAGGGGAGTCCAAAATCTTCAGGACGGTATTTTATGTGAAGAGCACATCCGTGGTGTCCGTTTCGACATTCGTGATTTGAAGATACACAGTGATCCTAGCCACAGAGGTGGTGGTCAGTTTATACCAGCAACAAGAAGAGCCATGATTGCTTCAATGTTAACAGCTAAACCAAGAATAATGGAACCAGTTTACCTCGTTGAGATACAGGTACCCCAAACAGAGATGGGAGGAGTATACAGTGTTCTTTCGAAGCGACGAGGGCAAATCATTGAAGCAGTTCAGCAAGAAGGTGTTCCCTTATTCCAGATAAAAGCACATTTACCTGTAAATGAATCATTTGGATTTACTGAAGAACTTAGAAGTCAAACAGGAGGAAAGGCTTTCCCACAGTGTGTATTTGATCATTGGCAATATTTACCAGGAGACCCCATGGATACATCAGATTCCTCTAGGTCTGGCACAGTTGTCAAAGAAGTCAGAAAGAGGAAAGAATTAAACCCTGTTATTCCACCACTACAAAACTTCATAGACAAAATATAA

Transcript

Bpl_scaf_51690-0.20

TCGTTGTGAAATAACCATTGCTTGTGATGGTGAAATTTTTCGGTATTGCGAAATACCACTGTGTATAAAAGAGAATGTTTTGGCGGGTTTATGTCAGAATAAAATGTGAGCGATTAGCTCAATTCTTAAGAGAAAAACTGAAATATAGCCCGTTATAGGGCAAGTTGACAGCCGCGTTCAGAGGAGAAGTAAAAAAAAACAAAATGGTGAACTTTACAATGGAGCAGTTACGACAGGCCATGGAACATCCCAAAAATGTCCGCAACATGGCAGTTATAGCTCATGTGGACCACGGGAAGACCACTCTAACCGATTCCCTCCTGGCCCGGGCAGGCATCATTGCAGCCAACCAGGCAGGTGATAAATGTGCCATGGACACAAGGAAAGATGAACAGGAGAAGGGAATTACCATTAAATCGACTGCCGTATCATTGCTCTATGATGTCGACTCCAAAATCCTCCCCGTCAGTCACCAGAAGGAGGAATCCCACGAATACATCGTTAATTTGATCGATTCTCCTGGTCACGTGGATTTCTCCTCTGAAGTGACGGCGGCGTTGAGAGTAGCTGATGGGGCACTGGTCGTTGTAGACAGTGTTAGTGGTGTCTGTGTGCAGACAGAGACGGTGTTGAGACAAGCCCTGTGTGAGAGAATTAAGCCAGTGTTGATGATGAATAAGCTAGACAGATGTGTATTCGAGACACAATTACAACCAGAAGAACTGTATCAAGGTCTACGAGGTGTTATAGTACGATTCAATGCTTTAGTAGCCACGTACTCTAATGAAGAAGTCATGGGAGATTTAACGGTTGATCCAACGTGTTGCAATGTAGCATTCGGATCAGGCTTACACCGTTGGGGTTTTACATTACGACGGTTTGCAAAAATGTACGCCGACAAATTTGGCGTCAGTGAAGATAAAATGTTGAAGAGATTGTGGGGTGACAACTTTTACAATACAGAGACGAAAAAATGGGGTACAGTGAAGGAGGAAAACTGTGTTAGAGGATTTAACAAGTTCGTTTTAGAACCTTTATACAAGGTACTCCATTCAACAAAATCCCAGGATAAAGCAGAGTTGCTTAACCTTGTAGAAAAAGTTAGTGTTAACTTGACAGCAGAAGAAAAAGAAACAGAAGGTAAAACTCTGATGAGAACAGTGATGAAGAAATGGTTACCAGTTGACGATGCTCTATTAGAGATGTTTGTGGTCCATCTACCATCTCCCTTAGTGGCACAGAAATACAGGACAGAACTGTTGTATGAAGGTCCTCAAGACGACGAAGCAGCTGTAGGTAGTACAGTAATAATGATGGGATCTGGCGTTTCTGGAGGTATCCATGATGTACCTTGTGGTAATGTGGTTGGTCTGTCTGGCATTGACAAGTTTCTGGAAAGATCGGGCACGATATCGACGTATGAGCATGCCCACAACATGAAGGTAATGAAGTTTTCTGTAAGTCCAGTTGTCAGGGTGGCCGTAGAAGTAAAGAATCCAGCAGATTTACCAAAGCTAGTAGAAGGAATGAAACGTTTAGCTAAATCCGATCCTTTGGTACAATGTAGACTGGAGGGAGGACAGCATATAGTGTGTGGTGCCGGTGAATTACACATGGAAATATGTCTTAAAGATCTGGAGAATGAACACGCAGGCGTTTCTCAACCCGTCGTCACTTACAGAGAGACAGTTAGTGACACCTCAGATCAAATCTGTATTGTAAAAACCTCAAACAAACTAAACAGGATATACATGACAGCATCGCCCTTACCAGATGGTCTTGTTGATGATATTGAGAGTGGAAAGGTATCTGCCAGTCAAGATGTCAAAGAAAGAGCACATTATTTGGTGGAGAATTACGATTTTAATGCCACTGATGCCAAGAAAATCTGGTGTTTTGGACCATCAAACTCTGGTCCAAACATGTTGGTAGACTGCACCAGGGGAGTCCAAAATCTTCAGGACGGTATTTTATGTGAAGAGCACATCCGTGGTGTCCGTTTCGACATTCGTGATTTGAAGATACACAGTGATCCTAGCCACAGAGGTGGTGGTCAGTTTATACCAGCAACAAGAAGAGCCATGATTGCTTCAATGTTAACAGCTAAACCAAGAATAATGGAACCAGTTTACCTCGTTGAGATACAGGTACCCCAAACAGAGATGGGAGGAGTATACAGTGTTCTTTCGAAGCGACGAGGGCAAATCATTGAAGCAGTTCAGCAAGAAGGTGTTCCCTTATTCCAGATAAAAGCACATTTACCTGTAAATGAATCATTTGGATTTACTGAAGAACTTAGAAGTCAAACAGGAGGAAAGGCTTTCCCACAGTGTGTATTTGATCATTGGCAATATTTACCAGGAGACCCCATGGATACATCAGATTCCTCTAGGTCTGGCACAGTTGTCAAAGAAGTCAGAAAGAGGAAAGAATTAAACCCTGTTATTCCACCACTACAAAACTTCATAGACAAAATATAATCCACATTTGTGTATTTGAATCAACAGAACTTTATTATATTTTAAAGCAAAAGAACTATTTTTTCTATGGTGCAACACTGATCAAAATTGAAATCAAATTATATATTTTAACTCACATATCAACAGTTTTACAATTTACAAGAATAAGAGTTAATTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF03764	EFG_IV	Elongation factor G, domain IV	Domain	Interproscan
PF14492	EFG_III	Elongation Factor G, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR005517	Domain	Translation elongation factor EFG/EF2, domain IV	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR041095	Domain	Elongation Factor G, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03234	EEF2; elongation factor 2	-	AMPK signaling pathway	ko04152	PMID: 28812709
K03234	EEF2; elongation factor 2	-	Oxytocin signaling pathway	ko04921	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_51690-0.20 global RNA-seq network