Gene detail

Detailed information of Bpl_scaf_50887-10.33 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_50887-10.33	DNA REPAIR ENDONUCLEASE XPF	Bpl_scaf_50887	982034	1005192	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_50887-10.33

GATGGCCGCCTCCAGTGAACACCAAACCGATTATGAAATGACATGTCATATATTTTTTTGAATGAAATGTGAATCAAATCAAAATTACATAAAATAGAAATACTCCATTCTGTACTTAATTTCTGTATATTATCCACATGAAGACCCTTGAATATGAAAATCAGATATTTTTGGACGCTTTTCATGAAGATGGATTACTGATAACTGCAAAAGGCCTTGGTATTGACAGAATATTGTTAAACTTTTTGAAAGTATACAGTGATCCTGCTAATTTAGTCTTGGTGATAAATACAACAACAGCAGAGGAAGAACACTATATTGAATGTTTAGAACGGGAAGGCATTAAACCATTGCCACGTATAATTACAAATGAAGTCAGTGTTAATGAAAGACAAAAGGTGTATTTGGAGGGAGGAGTGTTGTTTATTACCTCTAGAATCTTGGTTGTTGATTTCCTGACAGATCGCATACCATCAGAACATATATCTGGCATATTGGTGTACAGAGCACATAAAGTCATCGAGTCATGTCAGGAGGCTTTTATACTACGCTTATACAGACAGAAAAACAAGACTGGTTTCATCAAAGCATTCTCTGACAGTCCTCATGCATTTACATCAGGGTTTGCCTCCGTTGAGAGAATAATGAAGAATCTATTTGTTAGGAATCTGTTCTTATGGCCAAGGTTCCATGCCAGTGTTGTAGCAGGCTTAGAGAACAACAAGATTGATGTTGTAGAAATTCAAGTAAAGCTTACATCAGCCATGTTGGCTTTAGAAAATGCTATTGGGAAGTCCTTTGACAAGATCATACGCTTCCAACTAGATCCTGTATGGCACCAGTTAGGTGGAAAAACTAAACAGCTTGTAACTGATATCAAAACTCTTAGACTGATATTAAGACACTTGACTCAATATGATTGTGTGACATTCCACAGTATGGTAAACTCAGTCAGCATTCCAGAGAGAGAATATATGGACCACAAAGTAAAAAAATATATACTGATGAAACTGAGAAGAAGGACGGTATAAGTGGAACCTGCCTTAGAACCTTGTCCAAAGTGGACAGCCTTACTTGACATTTTAAAGGAAATTAGGGATGACATCAAACATGCTGATCTGGATCAGTGCCATGTTTTAATAGCTGCTGAGGATGATAGAACATGCAATCAAATAAGAGAGGTAATATGTGGAGGACATAAAAGTTTGTTGATCAGACTGTACAATAAGTCACTGGCACTGAAAGGACAGTATTTACAGGATATACAGGATAGTAACAAACCATGTTCATCAAAAGATGCCTACTATGGATTAATAGATGAACCGTTGACCATTATACACCCTCTACATGGTAGCAATGATAGGAATGGATTGTCTAAGACCTTACAGGAAGTTCAGCCAAGATATACTATGGTTATACCTGAGGAAAGAGAAGGTAGAATGGATGATGATCCTAATCTCTCAAGGGACATAACTCCTGCAAATGCTACAGTTAATACTAGAAAGGGGGGACTGCAGAAAAGTCCCTTACAACAAAAGGTTGGTGATTACATTTTAACCCCAGATATTTGTGTTGAGAGGAAAAGTGTCAGTGATTTGATTGGTTCATTAAACAATGGCCGCCTGTATAACCAGTGTGTTTCAATGTGCAGATATTACAAGCGTCCAGTTCTTTTGATAGAATTTGATGCTAACAAGTCCTTTGCTTTGCAGCAAGGTAGACAACAGCCAGATGCTGAAGTGGCCATGAAAATTAACTCTGCTGAGGTAGATACTGAATGGAGTGAAAGGTACAGTCACAATCCTCAGGATTTTTTGTTGAAAATGCCAGGAGTTAGTATAAAGAATTACAGAAGAATCATGAATAAAGTGGAAAACTTGGCAGAACTGTGCAATATGTCTGAAGACCAGTTAGCAGAAATAATGGACAACAAATCAAGTGCTAAACTCCTATATAATTTTATTAACACTGATCATAAACAATCAGAAACTTCTGGCAAAGCCATAAAAAGTAAGGATTTAAAGAAGAATTTAAAGAGGAAAAGATGATGAAGTGTTTAGTTAGTGGTTAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAAATAAGATGCTGAAGTGTTTAGTTAGTGGTTAAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAATAAGATGATGAAGTGTTTAGTTTGTGGTTAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAATAAGATGATGCAGTGTTTAGTTAGTGGTTAAAATAAGATGATGCAGTGTTTAGTTAGTGGTTAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAATAAGATGATGAAGTGTTTAGTTAGTGGTTAAAATAAGATGAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
-	-	-	-

PANTHER

PANTHER term	Description	Source
PTHR10150	DNA REPAIR ENDONUCLEASE XPF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000014	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0000110	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006296	Biological Process	obsolete nucleotide-excision repair, DNA incision, 5'-to lesion	Interproscan
GO:1901255	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10848	ERCC4, XPF; DNA excision repair protein ERCC-4	EC:3.1.-.-	Nucleotide excision repair	ko03420	PMID: 28812709
K10848	ERCC4, XPF; DNA excision repair protein ERCC-4	EC:3.1.-.-	Fanconi anemia pathway	ko03460	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_50887-10.33 global RNA-seq network