| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_50780-0.5 | RNA PROCESSING PROTEIN LD23810P | Bpl_scaf_50780 | 2354 | 41037 | + |
| CDS | |||||
| Bpl_scaf_50780-0.5 | |||||
| Transcript |
| Bpl_scaf_50780-0.5 |
| Protein |
| Bpl_scaf_50780-0.5 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF01805 | Surp | Surp module | Family | Interproscan |
| PF04818 | CID | CID domain | Repeat | Interproscan |
| PF08312 | cwf21 | cwf21 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000061 | Domain | SWAP/Surp | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR006569 | Domain | CID domain | Interproscan |
| IPR008942 | Homologous_superfamily | ENTH/VHS | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR013170 | Domain | mRNA splicing factor Cwf21 domain | Interproscan |
| IPR035009 | Domain | SR140, RNA recognition motif | Interproscan |
| IPR035967 | Homologous_superfamily | SWAP/Surp superfamily | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR047488 | Domain | U2-associated protein SR140, cwf21 domain | Interproscan |
| IPR051485 | Family | SR-related and CTD-associated factor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23140 | RNA PROCESSING PROTEIN LD23810P | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12842 | SR140; U2-associated protein SR140 | - | Spliceosome | ko03040 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_50780-0.5 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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