Gene detail

Detailed information of Bpl_scaf_49759-2.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49759-2.10	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	Bpl_scaf_49759	177911	191825	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_49759-2.10

ATGCCAGTACAGATACCACAATGGACAGAATTTTTATCTTGTCAAGTGTGTTTCCACGTTTTCGACGAGGGCCAGCATCGACCGATAAGCTTAGCATGTGGTCATACAGTATGTAAAACATGCTTGTGCAACTTGCCACAGAAACGATGTCCGTTCGACCAAAATACTATTTTAAGGGACATCACAGAACTTCCTGTCAACTATGCCTTGTTACAACTTGTTGGTGCCGCTGTTCCAGAGATGGAAATATTGCCTTCAAGCAATTTATCAGACCACGTCAAACATTACAATGTAGCGAAACGTTGTATTGAAGAGTTGGCTTTGCATCTCAAACCAGTTTCAACAGCACTTGACCAAAAGCAGAATACGACGACAGTTCCAGGAGGTAATGGCATTGAACCAAGTAATGGAATTTTAAGCCGACCCATGCAACGTAAGTTGGTGACCCTCATAAATTGTCAGCTGGTGGAGGAAGAAGGACGTGCCAGAGCCATTCGAGCAGCAAGATCGCTCGGTGAAAGAACAGTGACAGAATTGATTTTACAACATCAGAATCCACAGCAGTTATCAACAAATTTGTGGGCAGCTGTTCGAGCTAGAGGATGTCAGTTTCTAGGTCCAGCAATGCAAGAAGAAGTATTAAAATTGATACTATTGGCATTAGAGGATGGTTCAGCTCTGTCAAGGAAGGTCCTTGTTCTGTTTGTAGTACAGCGATTGGAGAAACATTACCCTCAAGCCTCTAAGACCGCCATCGGACATGTCGTACAACTACTTTATAGGGCATCTTGTTTTAAGGTTTCCAAGAGAGATGAGGAATCATCTTTAATGCAGATGAAAGAAGAGTTCAGGTCATATGAAGCATTACGGAGGGAGCATGATTCGCAGACAGTACAGATCGCCATGGAAGCTGGATTACGTATTGCTCCAGATCAGTGGTCATCTCTACTCTATGGAGATACAAATCATAAATCACACATGCAGTCTATTATTGATAAGCTTCAGACTCCACAATCGTTTTCCCAAAGTGTGAATGAATTGATCATCACGTTACAAAGAACAGGAGACCCCTGTACATTACAAAAACTACAGCCTCACTTGGAGTTTTTAGCCAGTATCGACCCTAATCCAGATGCACCCTCTCCGTCGTGGGAAAATCTAGAAGCCGTGATGAAGGCCATTAAGACTGTTGTCCAAGGATTAGTTGACTTTATACAGACCAATGGTTCTAAACATCTGGAGATTTTAACTCTACCAAACCTTAGATACAAGACCAGCATGTGTCGTGACTTAGTTCAGAGAGGAACTTGTCCTAGAGGTGGAAACTGTACCTTTGCTCATTCTCCAGATGAACTAGAAAAGTACAGAGCCAGAAATAAACGATTGGGGAAAGGACAATTTTTACCTGTAACAACATCAGCTTTAACACCAAGAGAAAAAATAGAACTAGAAACAGTTACCAAGACAACACATGAGAAGTTGATAGCAGCAGGAACAACATCAAAGCCAAGTACAAGTGTTATTGATTCTGTACCTACAAACAGAATGAACAGCACAGTTACTTCCCCTTCTGGACATCCATCAACGGCGATATCACCCGATGTATCAAGTTTGAAGGCATCATTTTCAAACATGTTCATTTCCACAAGTCAAGCTGAATCAACGGTGACATCCGGAGCTCCACATATACAATCTATGGCAGGAACAATGGGATCACCTCAGATGGCGTCATTCCCACAAAACACACAGCCAACGGCGTGTTATCCTCCAGAAATTTATCAGAACAGAGTACCTATGATAACAGTGCCAAGGATGATGTCTTGTGGTGCTCCATGTTACCAGCATTCTTCAATGCCTCCAGCTTATAGACCACCAGTGTATGGTATGAGTATGATGCCTCCACAACAGTGCCCCTATCAGCCAGGAATGGACTACAATATGACTGCAAATTGTCCTCCTCCTCCATACCCAGGGACGACCTACGTACCCTACGACTTGTGTCAGCAAGCACACAGTAATCTGAATCCATTTGCTGAACCATTCAACGTACCTCCACATCAGCATCCTGGGAATCAACAATACTGCTATTACCCAGAAGACCACAGATGTATCAGTCAGCCCCACGGTCAGCTAGCAGGGGCACTGTTTTGGTTTTTTTCTTGCAGGTCGAAGGTAGGTATGGGAGATATTGGTGCCTGTGCGCCAATGGGAATTAAACATTTACTTTGCAGCAGTGTACCTGTAACACAACGACTAAGAAGTCCACTTCAAGCCAAGAGAAAATTTAGCAGAGAGATGGTAATACAAGAGATCCTTGCCTTACATTGTTAA

Transcript

Bpl_scaf_49759-2.10

AATCATTAGTTTTGGGTATGTTTTTGGTTGATACCAAAAGTTGGTAGGTAACCTGTCAACAAAACAATATTTTATTAAATAGAACTAACAGATATTTTTGTTGTATTTCAGTTTTAATATAGATATACCTGTATTAATGATGTAATCATGCCAGTACAGATACCACAATGGACAGAATTTTTATCTTGTCAAGTGTGTTTCCACGTTTTCGACGAGGGCCAGCATCGACCGATAAGCTTAGCATGTGGTCATACAGTATGTAAAACATGCTTGTGCAACTTGCCACAGAAACGATGTCCGTTCGACCAAAATACTATTTTAAGGGACATCACAGAACTTCCTGTCAACTATGCCTTGTTACAACTTGTTGGTGCCGCTGTTCCAGAGATGGAAATATTGCCTTCAAGCAATTTATCAGACCACGTCAAACATTACAATGTAGCGAAACGTTGTATTGAAGAGTTGGCTTTGCATCTCAAACCAGTTTCAACAGCACTTGACCAAAAGCAGAATACGACGACAGTTCCAGGAGGTAATGGCATTGAACCAAGTAATGGAATTTTAAGCCGACCCATGCAACGTAAGTTGGTGACCCTCATAAATTGTCAGCTGGTGGAGGAAGAAGGACGTGCCAGAGCCATTCGAGCAGCAAGATCGCTCGGTGAAAGAACAGTGACAGAATTGATTTTACAACATCAGAATCCACAGCAGTTATCAACAAATTTGTGGGCAGCTGTTCGAGCTAGAGGATGTCAGTTTCTAGGTCCAGCAATGCAAGAAGAAGTATTAAAATTGATACTATTGGCATTAGAGGATGGTTCAGCTCTGTCAAGGAAGGTCCTTGTTCTGTTTGTAGTACAGCGATTGGAGAAACATTACCCTCAAGCCTCTAAGACCGCCATCGGACATGTCGTACAACTACTTTATAGGGCATCTTGTTTTAAGGTTTCCAAGAGAGATGAGGAATCATCTTTAATGCAGATGAAAGAAGAGTTCAGGTCATATGAAGCATTACGGAGGGAGCATGATTCGCAGACAGTACAGATCGCCATGGAAGCTGGATTACGTATTGCTCCAGATCAGTGGTCATCTCTACTCTATGGAGATACAAATCATAAATCACACATGCAGTCTATTATTGATAAGCTTCAGACTCCACAATCGTTTTCCCAAAGTGTGAATGAATTGATCATCACGTTACAAAGAACAGGAGACCCCTGTACATTACAAAAACTACAGCCTCACTTGGAGTTTTTAGCCAGTATCGACCCTAATCCAGATGCACCCTCTCCGTCGTGGGAAAATCTAGAAGCCGTGATGAAGGCCATTAAGACTGTTGTCCAAGGATTAGTTGACTTTATACAGACCAATGGTTCTAAACATCTGGAGATTTTAACTCTACCAAACCTTAGATACAAGACCAGCATGTGTCGTGACTTAGTTCAGAGAGGAACTTGTCCTAGAGGTGGAAACTGTACCTTTGCTCATTCTCCAGATGAACTAGAAAAGTACAGAGCCAGAAATAAACGATTGGGGAAAGGACAATTTTTACCTGTAACAACATCAGCTTTAACACCAAGAGAAAAAATAGAACTAGAAACAGTTACCAAGACAACACATGAGAAGTTGATAGCAGCAGGAACAACATCAAAGCCAAGTACAAGTGTTATTGATTCTGTACCTACAAACAGAATGAACAGCACAGTTACTTCCCCTTCTGGACATCCATCAACGGCGATATCACCCGATGTATCAAGTTTGAAGGCATCATTTTCAAACATGTTCATTTCCACAAGTCAAGCTGAATCAACGGTGACATCCGGAGCTCCACATATACAATCTATGGCAGGAACAATGGGATCACCTCAGATGGCGTCATTCCCACAAAACACACAGCCAACGGCGTGTTATCCTCCAGAAATTTATCAGAACAGAGTACCTATGATAACAGTGCCAAGGATGATGTCTTGTGGTGCTCCATGTTACCAGCATTCTTCAATGCCTCCAGCTTATAGACCACCAGTGTATGGTATGAGTATGATGCCTCCACAACAGTGCCCCTATCAGCCAGGAATGGACTACAATATGACTGCAAATTGTCCTCCTCCTCCATACCCAGGGACGACCTACGTACCCTACGACTTGTGTCAGCAAGCACACAGTAATCTGAATCCATTTGCTGAACCATTCAACGTACCTCCACATCAGCATCCTGGGAATCAACAATACTGCTATTACCCAGAAGACCACAGATGTATCAGTCAGCCCCACGGTCAGCTAGCAGGGGCACTGTTTTGGTTTTTTTCTTGCAGGTCGAAGGTAGGTATGGGAGATATTGGTGCCTGTGCGCCAATGGGAATTAAACATTTACTTTGCAGCAGTGTACCTGTAACACAACGACTAAGAAGTCCACTTCAAGCCAAGAGAAAATTTAGCAGAGAGATGGTAATACAAGAGATCCTTGCCTTACATTGTTAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF18386	ROQ_II	Roquin II domain	Domain	Interproscan
PF21206	Roquin_1_2-like_ROQ	Roquin 1/2-like, ROQ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR041523	Domain	Roquin II	Interproscan
IPR048575	Domain	Roquin 1/2-like, ROQ domain	Interproscan
IPR052249	Family	Roquin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13139	RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0000288	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035613	Molecular Function	RNA stem-loop binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15690	RC3H; RING finger and CCCH-type zinc finger domain-containing protein	-	Transcription factors	ko03000	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_49759-2.10 global RNA-seq network