Gene detail

Detailed information of Bpl_scaf_4833-2.22 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_4833-2.22	APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS	Bpl_scaf_4833	319962	355782	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_4833-2.22

Transcript

Bpl_scaf_4833-2.22

ATGATAGTACATGTACATAAAGATTCTATCGTAGACATTAGTAGCTCTCTTAATAGTGACACAGTGAGTACTTGCCCTCACCCAGGTGCATGTGTACATAAAGATTCTATCGTAGACATTAGTAGCTCTCTTAATAGTGACACAGTGAGTACTTGCCCTCACCCAGAAGGAAGTGCTTCAGAGGGTAATGAAAGTCCAACAAAGAAAGACAAACCAGAAATTGTTGTAGAGAAACCTACAGAGAAGGTATCACATGATGGTGCAGCTGGTGAAACAAGGGCATCACGCCGAAGGTCAAATTCTAGTAACCATAGTAACACAGATGATATTGTAATGCCAGGTCCAGAGGATCCTTCTCCTGTACAACAAAGACCAAAACGTGGATGGCGGAAATCAAGTAGAGAAGAGCATCCAGTGGAAGTGGTGAAACCTGATGATACAAAGCAAGTCCCTGAAGTGAAAGTTCAAGAGGAAGTAAAAGTTAATATTGCTATGGAAAGTGATAAAAATAACAGTGCAGGTGTTGAGGAAAAAGTAAAAGAATCAAGTGATGTTGATAAAATTCAGGATTCAGATATTGCTGAAAAAGTTACAGATTCAAATATTGCTGATAAAGTTACAGATTCTGAAAAAAGTAAGGAAGTAAATTCAGAATATGCTGATAAAGGCAGAGATGAAGTGGAGGAATCAGAGAAAGTTAAAGACTTAACTAGTAATAAGCACACAGCCGCAGAAGAGGAAAAGGAAAAAGAAAAGATGATTGTAGATGAGGTGCAAGAAAAGCGCAGTGAATCAGAAATACCAGAGGCTCCAAAAAGAAGATCAAATAGTAGTTCTAGTGATAGGTCAGATCACAGCAATCAAGAAAGACAAAAAACTGGTGGAAGACGGAGATCATCTAGCGGAAGTAGCAGTGATAGGTCAAGGTCAAAAAAGAAAAGGAGGTCAAGGTCATCCAGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGGGAAAGGTCACCACCAAAGAGGAAATCAAGGTCAAAATCTTCTTCAAGTTCAAGGTCACGCTCTCGGTCAATGTCTCCAAAGAAGAGGTCAAAATCTAGATCAACATCACCAGAAAAAGAAGCAGCTCCCCAATCTAAGTCACAAGATGTGAGAATGAAGTCCAAATCTAGATCAAGAGATAGATCTTCATCTAGATCAATGTCACCACCATCAAAGAGGAGGTCAATGTCAAAATCTAGGTCACACTCCCCTGTTTCAAAGAAGAGAACAGACATGGACGTTGTTGAACCTGTTTCAACAACAACAGATGATGAAGTTAAAAAATCAACATCCATGAACTCTTCAGAAATGGAGGTAGATGACAGTGATATCAAGCCTGACACCACAGTGGAATCAGTTAATGATAAGGAAGTTGACGGTGACCAATCACAGATTTCTGATGTTTCACCAGAGAAATCTGTACAGAAAATCACATCTACAGGACATGAAAAGGGAGATGAAGAAGAAAAGACTGAGGAGAAGGAGAATGTAAAAGAGAAACCAGTGAGGAAGAGAAAATGGGGGTCTAAGACAGGGCAACTACCAGGAGCCAAGAAGATTTCAAGTTACAATATATCAACAGAATCATTAAAGGGATTAATACCAGACATCAAATTAACAGAGCCTGTATTAGACTTAGGGAATGATGATGATAATATCTCTGATATTGACATCGAGGAAGATAAAAGAGATGTCAAAATAAGAAGAACCGTGGTTGTTAAAGATGATCAACCAAAAGAGGAGCTAGAGGAAGGAGAGGCTCCAGAGTCCCCAGAGGAGGGGGAGGCTGTAGATGATGGTGGGGCAGAGGAGGAAAGTAAAATGGAAGTTGAAAAAGATCAAAGAAAGGTCAAAGCTGAACCAGTGATTGTTCGTCGTGTTAGCCAGAAAAAACCTCTGATTGAAACAGAAGAACCGTCAAATGTGAAATCAAGGTCACCATCACCTGCAAGGAATGCAGTCAGTAATATAGTCCACGTTAGGAATCTTGTACGACCGTTTACAGTGCTACAATTAAAAGAGTTACTGGGGAGAAATGGAAACCTAATTGAAGACCAATTTTGGATTGATTCTATAAAGTCTCATTGTTATGCTACATATGAAACAGAAGAATATGCAATGGAAGCTAGGAAAGCTTTACATGGTAAAAAATGGCCATCATCAAATCCTAAAATATTACAAGTAGATTATGCTACTACAGAGGAGATTGAATACCATAAGAATGAAGAGGAGGCTCCAAGGTTAGCCAAAGAGAAAGCTTTAAAGGAGGCTAAAGCTAGAAAAGAGGAGGAGAAAAAGAGGAAGGCAGAGAGGGAAGCAAGGTTAGCAAAGAAGAAGGAGGAGGAAGCTAAGAAAAAGACTCCACCAATGAGAGAATGGGATAGAGATAAGATTAGACAGTCTGAGGAGAAGGAAGAACCTCAGAGAAAACGTCGACCATCTAGCGAGTCTCCTGTTAAAGACAGACGTAGAAGAGAAAGAAGTAGGGAGAAGGAACGAGAAAGAGATAGACCAACTAAAAAAGAGAAAGCAGATAAAAAAGAGGAAGAAGAACCACCAGCAAAGTTGTTAGATGACCTGTTCAAGAAAACCAAGGCTACACCGTGTATATACTGGTTACCTTTAACTGAAGCACAGGCAGCAGAAAAAGCAAAAGAAAGAGAAGCAGAACGAGAGAGAAGATTGAAAGAAAGAGAAAAGAGAAATACAGAACCATCACCTCCTCCATATAGAAATATGGATAGAGATAGAAGACCGCCACCACCAAGAGGTAGAACGGATGATTGGTCAAGACGAAGGTCACCTGACAGAAGACCACCACCTGGCATGAGAGACAGGAGAAGATAATTCAGTTTATGTAATATTGTCATACATTTTGAAAAGAGGAAATTCCGTCAGAATTGTATTTATTGGTTTAATGATAAAATGTAGTGACCAAGGCAGCATGTTTTAGAGATCTCACTTACAGTACATCATTTTAAAGAATGGTTAGATCTTTTTTTTATTTTTTTATTTCCAATGATATCTCTCAGCCCACAATTTTTCTAGAGAATTGAATCCTTGTACAAATGATGTAATCATGTAATAGATTGTTCCTTTTTTACAATGTATGCATTTGATAAAGCAATAATAATGACTTGTTACCATGGATACAGAAACTGTATTATTAGTGATGATATATCTCAGTATGAATGTTGAAAGTGCCGTTTAGCACCATAAACCAAACCAAACCATCATATAAATTAACTGCTTATATACATCAAATCTCATGTCAAACTAGGTTAGGATTAGGGTTATGCTGTTGAATGCCACTTTCAACAATATTTCAGTTATATCAGGGCAGTCAGTTTTGTTGGCGAACGAAACCCGAGTGCCTGGAGAAAACAACCAACCTGCCGCAAGTCACGGACAAGCTTTATCACAAAATGTATAAGTACGTCTCGCCATGAACGGAATTCGAACTCACAACGTTAGTGATGATAGGCACTGATTGCACAGGTAGTTCTAAATCCAACTACCATATGATCACGACCACTAAGACCCCTCTCAAACTGGGATAAATCATTTCATTGTAAAAAAAAAAAAAAAGAAACAACAAAAAAACCTTCATAATATTTGTTATGTTATATTACTCCTGATAAGACAAATGATGTACAATCACAGGTCACTTCAACTCCTGATGTAAGATTTTACTAAATTGCTTGAAGGTCTATTAATTGGGAGATAAATATGTGAAACTAATAAAATCAGGTATGTTTTTTTTGTTGTTGAGAGAGAGATGTCAATGATTCGTAATGTACTTATTGAGATCTGTGACATGTTTGAGAGAGAGATGTCAATGATTAGTAATGTATTTGTTGAGATCTGGGACATGTTTGAGAGAGAGATGTCAATGATTAGTTATGTAATTGTTATACCCCCCACAAAGTTTGGGGGGGTATATAGGTTTCACCCTGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCCGCATAGAGGGTACATGGTTTGTCCGTGCAACTCCTCTTACCGTTTTTATGCTACGACGTTTTTGTCCCCCGACGCTTCGTCGAAGGGGACTATAGAAATGGGTATCGTCCGTCCGTGTGCTTTTTGGTTTCCAGATGATAACTTGTGAATGAAAAGTCAGATTGAAGCTAGGTTTGGTATGTAAGTGTATCTTATGAATATCTAGGTCAAGTTCGATAATGACAATTTTTCGACTATTTTTACTAGAGTTGTGCCCCTTTTTATACCTCAAAATGGCTAAATATTTGGTTTCCAGATGATAACTTGGGAACAAATAGTCAGATTGAAACTAGGTTTGGTATGTAAGTGTATCTCATGAATATCTAGGTCAAGTTCGATAGCGATCATTTTTCGACAAATCTTACCAGAGTTACATCCCTTTTATACTTTGTCTGTGTGTCCCGAATTGGTTTCCAGATGATAACTTGTGAATGAAAAGTCAAATTGAAGCTAGGTGTGGCATGTAAGTGTATCTTATGAATATCTAGGTCAAGTTCGATAATGACAATTTTTCGACAATTTTTACTAGAGTTGTGCCCCTTTTTATACCTCAAAATTGCTAAATATTTGGTTTTCAGATGATAACTTGGGAACAAATAGTCAGATTGAAACTAGGTTTGGTATGTAATTGTATCTCATGAATATCTAGGTCAAGTTCGATAATGATGATTTTTCGACAAATCTAACCAGAGTTACTCCCCTTTTTTTTACTTCAAAATGGTCCTTGGATGGTCCCCTTTCAGAATTATGAGTGATACAGGCCCACCTGACCCTCTAGTTTACAGTAGTTTCAAAATTTAATCTTACGATATAACCTTGGCGTCGGGGGACCATTTGCCAACGGCCTTTTATTATTTTTGTTGAATGTGTTAAACATTATAATTTGACAAATAATATATTTTCCATGTAGACTTAGTTTTCAATAATCTTGGACACAGTCAGAGTGAAGCGGGGGGTATTAGTCCCACTATGCGGACAGTTCTAGTTGAGATCTGGGACATGTTTGTGAGAGATATCACAGATTCGTAATGTACTTGTTGAGATCTGGGACATGTTTGAGAGAGAGATGTCAATGATTAGTACTGTAATTGTTGAGTGACATATTTTTGTGTGGCTATGTCCATTCTGTTTGATTATATAGACTAACTATAAGGAGTGACTTGTATAATATTCAATATAGGAGGCACCATATTGGTCTGACTTATATACTCCTCAGTGATAGGACATCTAAATCTGGATCTTTCAATATTATAAAATTTTACCCTGCAGGTGTATGATTTTTTAGTACTAATTAAGGGAGTCAAATAAACTTGAGTGTTATTTAGTCATTGACCAGATTCATGTAGATAGTAAACATGGATGTGACAGAGGACATCCTTGAAAATGATTAGAACGATGCCTATTTCTGCTCTTTTCAGACAAGTTTGGCAGTTGTTTTAGACTTTTTGACATTGCAGGATAAACTGTCAACACAATATTCGTACATTATAGAATAAAGGCAAAAGTCATCTTGGCCGATTTTGGCGATCCTTTTGAACTATGATTTTATTTACATCAAATTAGGTTGTATCAAGTACAGCAGGTGTTGGAATCATACAATTTGGTAGTAAAAGGAACTGATTACATAGGGTGATGCAAATTAAACTAAATTATCATTCAATCATAATCATAGACCCCTTCCCCCCTTTTTTTTTTATGACAAAACCAATAAATATTATATTAATTTTAATACATGCTGATGGAATACCTCATATTTTTCTAACATGTAAATTTATCTTTCATTTCATGATCATCTTCAGAAAGAAAAAAAAAATAGGAAGAAAATTTATGTAAATTTTTGCTTTCTCTGAGAAAATTAATTACTGTACATACATGTATATTTTACTTGGAAAGGATTTTTTTCTTACTGCCTGTACATTTTAGTGTCCATACAATGAGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16294	RSB_motif	RNSP1-SAP18 binding (RSB) motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032552	Conserved_site	Acin1, RNSP1-SAP18 binding (RSB) motif	Interproscan
IPR034257	Domain	Acinus, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052793	Family	Exon junction complex-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46589	APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008380	Biological Process	RNA splicing	Interproscan
GO:0061574	Cellular Component	ASAP complex	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12875	ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus	-	Spliceosome	ko03040	PMID: 28812709
			RNA transport	ko03013	PMID: 28812709
			mRNA surveillance pathway	ko03015	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_4833-2.22 global RNA-seq network