Gene detail

Detailed information of Bpl_scaf_48197-1.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_48197-1.10	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Bpl_scaf_48197	89873	117686	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_48197-1.10

ATGTGGGCTTGGAGAAGACACAATACAGTCTTGACTTCCCCTTCATCCAGTGGGGATGTGGGCTTGGAGAAGACACAATATAGTCTTGATTTCTCCTTCATCCAGTGGGGATATGGGCTTGGAGAAGACACAATATATTTTAGTGAGAGTTACTTCACAGTTAAAGGTGCAGCCCTAATATTACCACAGAATGATGTGGAGTCGACATACACCAAGAAAATTTGTAAAAATAGCCATGGTAAGTTTAAAAATATTAATGCTGAGGCCACACCAAGAAAATCTGTAAAAATAGCCATGGCTGTCAAACTTGAAGTAAATGTTCCAGACCGACATAAGTATATGGCTGTGGTGTCATGCATGGGTAAACAGGACACAGAAGAATCAGTCATCCTGGGGGTAGACTTTGGGGGAGAAAACCATGCTTCCATTGGTTTAGTACTGCCTATCTGGGCAGATACTGATATAGAATTAGATGGAGATGGTGGCTTCAGGATAACGTCTGGTGGAAACCAACATTTATTTAAGCCAGTCACAGTACAAGTCATGTGGTTTACCTTACAAAGTTTGAATAAGTTGGTAAAGATTGCACGAGAAAATAAATATATAGCTCATGGATTATCTCATACATGGGTTACCTACTATGAGTCAAGTGTTACTTCAGACATTCCAAGGATAAATGAATGGCATGTCACAGAAGATTTGTTGTATTTCAAAGCAGAGCCTGTGTTACTCCCTACAGATGATGAAAATGATACGTTTTTGAAGAGAATTAAAGTAGAACTGAAAAATGTGATGATGAAAGAAGATTTGGATGAAGCTACCTCAAAACATTTGAGAACCAAGTTAGAAGAACAGATGAACATGAAGTTAGATAAATGGAAAGGCTACATAGACCAGGAAATGTTAACAATTCTGGGTCAGATGGATTCTCCTACACTGATTAAAGATTATCTTTATCTAGGATCTGAATGGAATGCTTCTAACATTGAAGAACTAACACATAATGGAATTCTCTACATAATGAATATCAGCAGAGAAATAGACAATTTCTTCCCTGGTGTACTACATTACTATAATATAAAAGAATGGGACTGTGAAGAGACAGATCTGTTAAAACACTGGGAAAATACACACAAATATATAACTAGAATCAGGGAAAATAAAGGAAAAATCTTGGTTCATTGTAAGATGGGGATAAGCCGTTCAGCTACAACAGTGCTAGCATATTTAATGAAGGAGTACAACATGTCACGTCAAGAAGCATTTGACTTCGTCAAGGATAAAAGGAGTTGTATAATGCCAAATAAAGCCTTCTGGCATCAATTAGAAACATATGAAGGCATCTTAAGTGCAAGCAACCAAAGACATCTATTTAAACAAAGGTCAGAGGTCAACATCGCAGAGAAAGTCAAAGAAGAAATAGATAAAGAAGAAGCTTGCAATCCAGAGAATTTTTTAGAGGTTTATCAGGAACACAGATGGAGTAAAGACGGTTTAGAGGAGAGTTACTCCGATGTGTTCCTTAAAGATATCTCAGATTCTTGTTCCTACGACTTTGATATGGAGATTGGCAGTAGTTCTAGAAGTGCTGATTCTAATGAGGAGTTTTATCCAGATTTACCTTCCCCTCAACCAGAGGGAGCCACTGGTGGTACCAAAGAATTTCCTGCGGAGGAAAGTGATGACTCTGACTCATCCGAGGAGGAAGAAAACGATTCAAACAATTTACTTATGACATCAAAAATGACCTCAACCTCTAATATTGCTCCTAAATCAGACACATTAACTTCTCAGTCTCAGTCAGAAAGTAATACTGTTCCTGAATCAGAAACAGTGATTGCTCAGAGCAAGCCGGGAAGTGTTGTGAATGAAACTTCCACAGATAAAGCTTATACAAGCCAAAGTGTTGATGTAAAGCTTGAAAGTGAAAATGACCTTGACATTGCTGAAATTGAAGGTGACTGTGACCTTGAATCAGATAAACTTACGGAGGGCACTTCTTTATCTGATTTTGGTATCCACCAGCATTATATCAAGGAGAATATTCCATGGAGTGCTGGCACTGTCAAAAAAACTAAGGAGGGGTTAGAGGGCAAGCTGAAGGACACTCCATCAAGTTCAAGGTCAAGAACAGTTTTAGATGATGTGAGTGTTGAAACAGCAGGCGAAGAAATACAAATTATAGTAACAGATGACACAAAATCTGAACAATGCATTCAAACAATAGATGGCGTTACTGAGACTGAAACAAATTCTGAAAAAGTTGAGGATCATGAACTCAAAGAGAAATTAAATGACGGGGATGATAAACGACCTACATCAGTATATGATATAGAAGATATACCTTTACCTGCTGGGATAGTACGTAGAACAACACAAGAAATAGAGGATAGAAATAGAACAAATGATGAATCTCCAGACTCTTCTCACAAGTCACTACAAAGATCCTTAAGTTTGAAAACCGAGCGAGATACTCCACGAAAAAGACGAAATTCTGAAAGACGGAAGACAATAACTCCCATATTATCTCCATGTCCTTCATCAGGTGATGCTAGTCCTACCAAAGACATTAGTTTAACAGATATAGTAGGAAATGACTCTGTATTCATCAGTCAAAATATCTCTATGAGACAAAATGACGAAAAGAAAGAGTCAGAAATTTCTTTGGATGACGAAAAGACAGATTCTGATCAGAATGTTTCAAATATTGACAGTAAAGATAATGATCCAAATCTGACAATAGAAGGACATGTGTTTGAACCAGAAGAGCGGGATTTAGCTGTGTATAAGTTTTTAGGAGAGGAAGTTTCACTCGAAAAGGGCATGGTTAAAAAACAGAAAATGGGCATTGAATTGATGAATCGTGAACACGAGAAGTCAGAATCTGGTAGTCGTAGTAGGAGAACATCCGACAATGAAGTCACTTGTTCATCACCGTCAACACCCACAGAAGGCAGGAAAGGAAATAAAGACTTGCAAAAATCAGAGACAAATAGTACTATAGAATCACCATCAAGTGCCTTGTGTTTTGACAAGCAGAGTCTGATTGAAAATTCTGAAGAGCAATCTGAAAACCAAAAAGAATGTTCAGACAGTAAAGACAATGTTGCTTCAGAGTTGACCAGTAAAGAAGGAGAAGGAATTGAAGACAAAATTCCATTATTTAGTGAAGCCAAGGAAAGTTTTGAAAGAGCTAGTGCTAAAATGAAAGAAAGTAATGATGTGTCACTTCTACATATGCCAAAAAGTAAGAAAACACCAGAGCCTCATTTTGATGCTGCAACATTGAAACTGATAAGAGAAATAGGCTCTGCAATTCTCAACAGTCCTGCCAAAGCTGAGGTTGAGGACTTTGAAGAAGAAGAGGCACAATTGGGATCTGGTCTAGTCAGACATTATGTGAAAAACATAGAAAAGAAAACAAAAGTGGTGAAAAAGAAAAAAATGAAAGAAATAATAATAATTGACAAAGATTCACAAGAAAAGAAGCGTCCATGGCGATGGAGTAGTCCAACTGATCATAGTAAAGATACGTCATCCATTTATGATCAATCAAGTCGAGGAGATGTTGCCAAGAAATTGTTAACACAATCAGTTAGTAGTCCCATTCTGTCGTCACAGCAACTTATACAGCTGGGAAGCGAAAAAGGAAGTGAATCAGAGTTAGCTCCCATTACAGGAAGTCCTCCCAAGAAAAATGGAGAAATTAGCAAAAGTCCACCCAGGAAAACTACAGATAGTGTGTCTGCTACATGTAATGTTTCTGAAACCTTCAATAAAAAAACTGTGGAAGAAAATAAAGGAGATGAAAGTGAGGGCGGTTTAGGTGTGAAATGTTTGGTTGGGAGGTATGAGGGTTCTTGTGATATGTGTTTAGGTAGTCCAGGTTCTAATTCATCTCTACCAGAAATAAAAGAAGTAAATTCCTGTGAATCTCTTAAAAGTTTGGGTAAGGACTCCGATGAAACAAAAGGCACAAACGTCAAAGAAAGTGAAAGTTGTTTAAGTCGACAATCAGACAGTGAAGAATCTATCAACGAAGACTGTGTCAGATTACGTAAAATAAGAAATCAGCTCAATAAAGCCAGTCTTCGTAATCATCGTCCCAAATCGGTAGAACTAGTCAGGCGTAACTCAGCTACACCAGCACCAGGCTGGTTTAATATGGACAATAATTCACTCAAGGATGAAAATCAATCTGGGTTTTCATGGGAAGGGAAAAAGATCCGAAAGCTTCATGGAAAGAGTCATCCTTTAGCGAAACTAGAGTGGAGAAAATTTTATAATACGATGTAG

Transcript

Bpl_scaf_48197-1.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF08766	DEK_C	DEK C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR014876	Domain	DEK, C-terminal	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR043587	Family	Protein phosphatase Slingshot-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45864	SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0016791	Molecular Function	phosphatase activity	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030837	Biological Process	negative regulation of actin filament polymerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05766	SSH; protein phosphatase slingshot	EC:3.1.3.16 EC:3.1.3.48	Regulation of actin cytoskeleton	ko04810	PMID: 28812709
K05766	SSH; protein phosphatase slingshot	EC:3.1.3.16 EC:3.1.3.48	Axon guidance	ko04360	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_48197-1.10 global RNA-seq network