Gene detail

Detailed information of Bpl_scaf_48014-0.32 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_48014-0.32	METHYLENETETRAHYDROFOLATE REDUCTASE	Bpl_scaf_48014	53068	89294	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_48014-0.32

TAGGAACGTACGCGTACGCTCAGATATTGCCGGGTTTGTTTGACTGAAAACAGCTGATAGTGTGAGATTTAAGTCTTAAATATGCCTGAACAAATTCAGAACGGGGTGGAGGAAAATGGCTGCTGTACCAAGCAGTCGTGTAGACCACCATCACCAATGACGGAATACAGACCTTTGAATGAACGGATTCATAAGCGAATACAGTCAAAGGATCCATGGTTTTCGCTTGAATTTTTCCCTCCAAGAACAGAAAATGGAGCTGTTAATCTTATTAGCAGAATTGAAAGAATGAACCAAGGGGGACCACTCTTCTGTGACATTACTTGGCATCCTGCCGGAGATCCTGGAAATACCATGAAACCAACTAGTTCTACATGTATGGCAGGATCAATGTTAAACTTTTGTGGTGTTGACACAATGCTTCACATAACATGCGGTAACCAAGACATTGAAGAAATCAAAGAAAATCTGAAGAAATCTCGTGATCTGGGAATAAAAAATTTATTGGTGTTACGAGGTGATCCCCCAGATGGTGGTGAATCATGGACTTTCCAGAAAGGACGTTTGAATTTTGCCACAGATCTGGTGAAACTAATACGACAAGAACATGGAGATTACTTCAGTATATGTGTAGCAGGTTACCCAACAGGCCACCCAGAATGCAGTTCATATGAAGATGACTTGAAATACCTAAAGGAAAAAGTAGATGCTGGAGCTGATTTTATTATTACACAGTTGTTTTTCAAATCAGAGACTTTTCTGAAATATGCATATCAGTCATTACGTCACATAGTGAAACTATCTCGATTAGAAGTGCCGCAGGAGATCATAGACACCATCAACCCAATCAAAGACAATGATGAAGCCATCAGAAACTTCGGCATTGATCAATCTGTTGCTATGTGCAAGGATTTGTTGAATAGTGAAATTTATGGCTTACATTTTTACACCCTAAATCGAGAGGTGGCTACAATTGAAATTCTCACAAGACTTGGCATGTGGGTTGAGGAACCCCCAAAGCCATTACCATTTAAATTAACAGCTCATCACAACCGATCTAAAGAAGATGTACGACCAATATTTTGGAGGTTAAGACCAAACAGTTATATTCATCGTACGACGAGCTGGGACGAGTTTCCAAATGGACGTTGGGGAAATTCTTCTGCAGCTGCTTTCGGTGATATTTCAGACTATTATTTATTTTATTTGAAACATAAATCACCAAAAGAAGAAATGCTAAAAATGTGGGGATCTGAATTGACTAGCAAACAAGATGTGTGGAATGTCTTCTATTCCTATATCACCGGTGAACCAAACTCTGCTGGAACCAAGGTTAAATACATTCCTTGGGTGGATGAAGAATTGAACCCTGAAACATCAATGATTCAAGAAAAACTTGCCGCTGTAAACAGACGTGGAGTTATGACCATCAACTCTCAACCCAATGTTAATGGAGCACCATCTACAGACCCTAGGGTAGGATGGGGTAGTCCTGGTGGCTATATTTATCAAAAGGGTCAAAATGATTACACAAACTGTGACCTGTCGTGTCCTATTGCAGTCACATGGGGTGTGTTTCCTGGTAAAGAAATTATACAACCAACAGTTGTAGATCCAATAGCATTTCAATCTTGGAAGGTCGTTTTAACAGAGAAGATAAGACAATTGCCCTGGTGTATTGTGGTTGTTTTGTAAATGTGTTATTAATCAGCTTGATATGAGGCCATCCTTTAAAATATATCAGGTTCGTCCCAGTCCAGGTTTTATATGAAATATGTACATGTACTGTATGTAATTACTTACCCATGTCAAAAAGTGTAATAGATATTTTTTTTCAAGGATGGCCTAATTAGATTATATATCTATATATATTATTTATGATTGATAGTACAGGGTCATTTATTGGTAGTCATATCTATTTTAGCTTTATATCACAATTATTACACATTGCATTGTGGGAGTTTTTAGCTGTCATCTTAACTTGCTTGTTTATTTGAATGAACAAGATTGAAACCATAAACAATTAGATTTATTTTTATTGTTTTTGTGTTGTTTTTTTTATTGTGATTCTACAGTATTGTTGCATAATTAAATGAGATTTACTCATAAGACAAAATTTGATTGCGACTCGGCTATTTATTAATGATATAATCTGTAATAAATAGTCAAGTTGGTAATCTAATTTTGTCTCTGATTTAATAGCCAAGTCAGTAATCAAATTTTGTCTCAATGCTGTCATAGATATTCGAAATTTCATCAGAAGTAATAAAACATTTCCATGAATATGACAGATCACCTATTAGAGGTAAATGGCAGTTGTTAATTGGCTATAATGTTGATTTCATGTCATCAAAAGTATTCACATTTATTTATGCATAATGTTGTATAGTACCGGTATTAACGTTGTATAAAACATTACTTATGTTACCTTTACTTATAGAATCACCATTTTAACAAGCAACATCCAATCAGTGTGGTCATGATATAAAACAACTACTTATAGAATCAACACTTTAAACCAGCAACATCCCTTTAGTATGATCATGATGCATGCACAATAAATATTTTGAAAACTGTTAACTTCAGTATTTAAGCGTTTTATTATTACAAAGCAGTAATTTAAAATTTTATAGAATTATAATATATGACTATCTTTCACAGGTGGTTTGCTACGTCACACGCACGGATACTTGAACATTGCCTTGAGGTAGGTTTATGCAGTTGTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02219	MTHFR	Methylenetetrahydrofolate reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003171	Family	Methylenetetrahydrofolate reductase-like	Interproscan
IPR029041	Homologous_superfamily	FAD-linked oxidoreductase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45754	METHYLENETETRAHYDROFOLATE REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004489	Molecular Function	methylenetetrahydrofolate reductase (NAD(P)H) activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006555	Biological Process	methionine metabolic process	Interproscan
GO:0009086	Biological Process	methionine biosynthetic process	Interproscan
GO:0035999	Biological Process	tetrahydrofolate interconversion	Interproscan
GO:0071949	Molecular Function	FAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00297	metF, MTHFR; methylenetetrahydrofolate reductase (NADPH)	EC:1.5.1.20	Carbon metabolism	ko01200	PMID: 28812709
			Carbon fixation pathways in prokaryotes	ko00720	PMID: 28812709
			One carbon pool by folate	ko00670	PMID: 28812709
			Antifolate resistance	ko01523	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_48014-0.32 global RNA-seq network