Gene detail

Detailed information of Bpl_scaf_46270-2.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_46270-2.4	SYNAPTOTAGMIN	Bpl_scaf_46270	202691	213227	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_46270-2.4

ATGTTTTTTCCCCATAGTGATGTTTTTTTATTTCAAGGACAAGAAGCAGTCCGAGGATATGGATCAACCACGAATGGCAGTAAAGAGCCGCCACCGGAATCACTGCCACTGTCCCCACGCATACGTCTAGGATCTGTCAGAGAATCATCAGAATATTCAGATTCTAGTGGCCCCAGTATCATAGAGATGAAACGGGCGCAGTTGAAAGATGGTGTGATGCAAAAAAGAAGCTTAAGTGTTCCGAATGGAGATGTGCCTGATTATAAAATATCTTTACTTAAAGGAAATCTAGACTTTACAATGAAATATGACACAAAAGAAGGGAAGTTAATTTTAAACATCCTACAAGTGACAGATATGGTGCTAAGTGATGCATCAGCAACTATATCCCCTTATGTGCGAGTGCGATTTTATCGTGTGCCATACCAATTTTTTAGCTTAAGCAAAGATCACGTGCTAAATAATTTGCATATAGAAATTCGAACTAAAATGAAGAAACACAACGACATTCCAACATTTAATGAATTATTTGTGATTCCAATTGACAAGGACGATATAAAATTATATACTGTGAAGTTGCAGTTTTGTGACTTAGACAAATATTCCCGACATCTTGTTCTCGGCGAAGCAACATTGACATTGAAGAAACTAAATCTCACAGAAAAAGAGGAAGTGGAATGTAAAGAAAGCCTTCATCAACCTGCCGATGAAGATATTGGTGACGTGTCAATCGGATTAAATTATTTACCGACTGCAGAAAAATTATACCTTACAATTGTGAAGATACGAGGACTACGTCCCATGAATAAACAAGATAATACCACAGATGCATACGCACGTGTGGCTTTGATGTTCGACGGAAGACACTTAAAGAAGAGTAAAACAATAGTTAAAAAGGGAGATCTACATCCTGAATTTGATGAAACGTTTGCTTTTGATGTACCAAGTCAGAAGCTTGGAAGTGTTTACTTCAGGGTGTCCATATTACATGTTGGAAAAACAAAAGAAGAACACAGATTATTAGGGCGGGTTTATATTGGACCAAATCTAGACGCTGACGCTCACACACATTGGATGGAAATGATTCATACGCCGAGGAAACAAATAACGTCTTGGCACAAAATTCAAGGATGAATCAAATTGAACTGATCTAAAATATGCAATATGCAATATGAGATCACCAGTCTTCCATTATTTCCTAGAATAGATAGATATAGGGGGTACATCTTAATACTTATGTGATATCTTGTTTGTTCCGTCTTACATTGACTAAAGCAATAATATTGATTAGTGGGTAAATATTGAAGACAATATATAACCAGGTACATTGTATAGTATTTTATAGAGAATGTAGTTAAATGTGATAAAATATTGTATGTACATTTTCTAACACAATATGCATTGCTTAAAGCACATGTCCGCAACGGATACAATGCGCATCTACCTGATGGCACATGATTACGAATGTAATTAGATAATATTAGATCACCATTCAACATTATGTACAAGCTTTAAGCCCTCGACAAAATGTCAAATATGAGTAAGATACAAGAGTACAAAATTTTTATAAGATATGTTAACTCACAACACAAAAAAAAACAAAAAAACAAAAAAACAAGAGAGAAACCAGGAACTTCGAAATGTCGGAGAAAGGATGAAGCAGGTCCTGTTAAGAGTTATCGTACTTAAAACACTTCCGGTGGTATCATGCGCACTATTTCATATTGTCTTTCTTATGTACATATTATATGCGTAGTTGTTTATCATTTTGTTAAAGTGTGTTTTGGGCATTTTCGCCAAAATTGTATAAAAAGAATGCTATCGCTCAATGTTGAGCAAATATGAACGTATTTTTCTCTCTAATTAATATAACTATATAGTGGTATATTTTCAGCCACTTGCACCAATATTAAATCAATGATATATGCGTAAGAAGAGTTTGAAGATACCAAAGGGTTATCCAGAAGCCGTAAATACAAGAAGGACAGACAACACAATGACCACAAGAAAAAGGAGAAACAGACACAAACATCACACCGGGGATGATTTCATGTACTCCGGAAGGATAAGCAGTTCCTGCTTCACTAGTGGCACCAACAACATCAGGACCATCAGTGTTTTTCTTCGTGAATAATACCAACAGCCACCATATAACTCAAATACGGCTGTATATATCCATAACACTTAATAGAAACGTAGATTTCTAAAGTAGTGCACACGACACGTTTCTGGACTAACAGACGATCAGAGTCAAAATAAGCTAAAAGTCATAGGAAACAATGCAACCAAAGGGTCTAAACATCATAGCCAAAATCGTAACTAGATTAACACGACGGGTGCCACTAGTGGAGCAGGAACTGCTTACCCTTCCGGGGCACCTGAGTTCACCCCCGGTTTTTAGTGGGGTTCGTGTTACTCGATCTTGAGTTTTATATGTATGTTTTGTGGATCGTTGTTTGTTCTTTTGTACTTTTTCTTTTGGCCATTGTGTTGTCTGTTCTTATTTGATATACGGTTTCTGATTGGCCCTTTGGTATCTTCAAACTTTTCGTCTAAGGTTATCTATGCATGCGAAAAGAGAATCTAAGATATGATAATAATTAATTGTATTATATAGGAACTATACATTCCAGTAATAATGGGTGGATGTATCGGCCCAGTGATAGTAATCAAAACTTATCTAATTTAAATATTGTTGAATGTGGAGTTAAGTACCAACATTTACAAACCGTATGAGTGACGTAATGGTAAGCACCATCGCCTCGAGTGTAGTAAATCTTTGATTCAAGCCCTAGTCTGGTTAAATCAAAGACTACATATTTTGGTGTTTCCTGCTTATCCGCTGCGAACTCAGAATTAATGAGTTGGTGCAAAGATTGGTTGGCTAGAAATCAGGATAATGTTTCCACGTGGAGCAACATGTCTACCAGGGGACTGTTTTTTTTAGTCAGCCAACACTATGCAAATTGAGCTTCAAGCGTGTTTGTCTAATACAAAGCGGACATCACTTCATTTAAATGTGATTTTTTTCTCGCCATCACATGATTCACTTGGTGCAAAATAACAATCAATCACTCACTCACTCATATATTCATGTAATATTACCTATAGATTATAATTATAAATGTTCTTTGTTACCTTCATGGATCACTGACGTCACGAGAACTTTATTATTTACTGTGATCTGTGTGTTTCATGTGCATAATATATGTAATGATGAAAGGATATATTCAATTACTAAGGGTATATTCAATCACAGTAGGATATATTCAATTATTATAGGATATATTTAATTATAATAGGATATTTAATGATAATAGGATATATTTAATTATAATAGGATATATTTAATGATAATAGGATATATTTAATTATCATAGGATATATTCAATTATAATAAGACATATTTATATAATATTGTTGTGTTAGCAATGACTATGCCAATATAGTGGTCAGGGTTGAAGACATAGTGCACGACCCGAAGGGGAGTGTACTATTTCTTCAACCCTGACCACTATATGGCATAGTCATTGCTAACGCAACATTATTATTATTATTATGCTGACTGTTATATGTAGACAAAATATATTACAATAAAGGAGGCCCTGATACTGGTGACTAATATAATGGATCAGATAGTCTTTAAAGTGTGAGAATATTCTTTGTTTCATTTAAGGCTTTAAAAATATCAAGATTTTTGAAATTTAAAATTTAATTAACAAAAATAACAAGTATTAAAAAACAGTAACATGAATAATAATGTTGGTGGCGACTATGGTTTATTGACAGATTTGATCAGCCCCCTTGCACATGGACTAGCTATATATAGCTTAACAGACATCTGAAAACCCAACCTTCCCCGCGTGAAACTGTAATAGTAGATGTACTATTTCCGCATAGTATATCAACGCTATATAATTCTTTGTGATATATGCCAAAATATCGTATGAACTTATTTTACAGAAGAAATTTACAGAAAGCATAATAATCAATTATAATAGGGATATATTTAATTATAATAGGATATATTCAATTATAATTGGATTATTCAATTATTAGAATATATATTCAATTATAATAGGGTTATGTATATGAATGAAATGTGCCATATATTGTTTGTATCCATGATAATATTGTTAATAATATACTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008	Domain	C2 domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10024	SYNAPTOTAGMIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000149	Molecular Function	SNARE binding	Interproscan
GO:0001786	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005544	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0014059	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0070382	Cellular Component	exocytic vesicle	Interproscan
GO:0071277	Biological Process	cellular response to calcium ion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15290	SYT1; synaptotagmin-1	-	Synaptic vesicle cycle	ko04721	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_46270-2.4 global RNA-seq network