Gene detail

Detailed information of Bpl_scaf_46063-0.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_46063-0.7	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Bpl_scaf_46063	2072	33789	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_46063-0.7

ATGACGTTACCAGTAACCATGTTGGCATCGCCTCTCAGTCCGCATGATGTGACTGCCCAACTAACAACATTTAAATCCTATGTGGCATTGATAGCAGATCCAACTCCTGGCATTGTTGAGAAGAAGTTAAAGGCAGCTCAGGAATTAAGTGAAAACTTCGAGAGTGTTGTACAATCACCTCAGTATCCACAGTTTTTATGCGATGCTTTGAAAGTTTTTCTGAAAATTCTAGATGATGGAGAACCACACTTTATTGCAGAACAGAACATGCAGCAATTGCGGAAGCTGTTATTGGAAATCATTCACCGTATACCAAGTAATGAACACTTAAAGAAATATGTACAACAGATATTATCTTTGATGTTTAAGCTGTTAAAGATTGAAAATGAGGAGAATGTTATAGTTTGTTTGAGGATAATCATAGAATTACATAAACAGTACAGGCCACAGTATAATGATGAGATCAAAGACTTTTTGCAGTTTGTAAAAAATATTTACAATGGATTACCAAATCATTTGCCAAAAATATTTGAGCCTCGAAGTCAGATCAAAGTAAAAGATGTGACAGAAATAAATGTAGATCAGTTATTACAGGAGACATTTACTACTACAACTATTTTAACAGACAAGAAAAATGCTGATAATCAAAATATTTCTTACAACATCATACCAAAAGGAACCTTATCACTGAAAGTTCTGGCAGAATTACCCATTATTGTAGTATTAATGGCAAGCCCATCATTTAACAAGGAGATATTTGTAGACTTTATAGCAGCTCAGATTAAAACTTTATCTTTCCTAGCTTATATCATTAGAATTTACCAGGAACAAGTTCAAGCTCATTCTGCACAGATGGTAAAGGGCCTTCTGGGATTGTTGACATTTTGTCCACAGGAAGTAGCACATCTAAGAAAAGAATTGTTGATAGCTGCTAGACATATCTTAGCAACAGATCTCAGGAATAAATTTGTATCCTGTATTGACCAACTGTTTGATGAAAATGTGTTAATTGGAACAGGATGGACAACTTATGAATCTCTCAGACCACTGGCTTACAGTACACTAGCAGATTTAGTACATCATGTAAGACAAGCTTTACCACTCAATCATCTATCACTGGCTGTCAATCTTTTCTCTAAGAACGTCCATGATGATTCTCTTCCCAGCAGTATACAAACAATGTCGTGTAAACTTCTGTTGAATTTGGTAGAGTGTATCCGTGCTAAAAGTGAACAGGACAACGGAAATGGTAGAGAACTGCTAATGAGAATGTTAGAAGTGTTTGTACTTAAGTTTAAATCTATAGCTAAAATTCAACTCCCACAGATTCTTCAAAAATGCAAACAACAGCCACAGAATACACAGACGTCAACTTTTGATACCAAAGTAGATACTAAAGTAGACACAAAACCTGTATTAGAACCACAGAAACAACCCTCCCCTGACGCTGGTCTAGATAATAAACTGCCATCGTCTTCACTCAGTGATCCATTGTCTAAAGATAAAGATGACAAAGTGTGGCCTGACAAATCAACCAATAGATTTGGTATTACTCCAGGACAGACCAGTACTTACACAGTCAATGATTGTCGTAGTCTTGTCAAGACATTAGTGTGTGGTGTCAAAACTATCACGTGGGGAATAGTCTCTTGTAAAACTACAGGCACAGAGGCTACTACTGTACCTGCTAAACAGTTTTTACCAAAAGAAACATTAGTGTACATTAGACTGGTGAAGTATGCTCTACAGGCATTAGATATATATACAATTAATGTATCACCTACAGGACAGGCTGTAATAAGACCAGCTGTAGTACAAAGTGTAAGAACAAAAGAAGAAAAAGAAGTGTTAGAACATTTTGCTGGTGTGTTTAATATGATGCATACTTTGACATTCAAAGAAATATTTTCTACAACAGTTGAGTACATGGTTGACAGAATACACAACAATTATGCATTACAGATTGTAGCTAATTCTTTCCTGGCCAATCCTACAACATCTCCTACGTTTGCTACAATACTGGTAGATTATTTACTGGCTAGATTAGAAGAAATGGGATCTAACATGGATAGATCTAATTTGTACCTGAAGTTGTTCAAGCTTGTATTTGGTTCTGTTTCTTTGTTTGCTGCAGAGAATGAACAGATGTTAAAGCCTCATTTACATGTGATTGTAAACAGATCAATGGAGTTAGCTATGAGTGCCAAGGAACCATACAACTACTTCCTGTTACTGAGGGCATTATTTAGATCAATAGGTGGAGGAAGTCATGATCTTCTTTACCAGGAATTTCTACCCTTACTACCAAACTTATTACAAGGATTAAACAGTTTACAAAGTGGATTACATCGTCAACACATGAAGGATTTATTTGTAGAGTTATGTTTGACTGTACCAGTCCGTCTTAGTTCTTTGTTACCATATCTACCAATGTTAATGGACCCATTGGTTTCTGCTCTAAATGGATCACAGACTCTTGTTAGCCAGGGTTTAAGAACACTGGAATTATGTGTAGATAATTTACAACCAGATTTTTTGTATGATCATATACAACCAGTTAGGGCTGAACTGATGCAGGCTCTTTGGAAAACGTTGAGGAATCCTGTTGACAACATAGCACATGTAGCCTTCAGGGTTCTAGGAAAGTTTGGTGGTGGTAATAGAAAGATGCTAAGAGAACCTCAAAGACTTCAGTATAATGACAAGGAAACAGCAGGTCCATGTATTACGATTTACTTCCAGGATTCTAAAACACCTGTAACCTTACCTGTAGAAAAGGCAATAGATGCAGCCCTCACAGCATTGAAGTGTAGCACAACAGAAAACTTTGTACGACGTCAAGCATGGGAACTCATTAAATGTTTCCTGGTGTCTGTAATGAATTTAGAGGATGACAAACAGACACTGACATACCTCTTCACTCATACCAGTTTTACAGAAAATGATGTTCCACTTCAGACTGGTCCCCTGTATAAAACTCCTGATTCTCACTCCAGAAAAGTCCATGAGCAAGCCTTGACAGGGATGTTTGTTGCAGCTGCCATTAAAGAACTACGGCAAACAGCACTGCCATTCATGGCATGTATGGTCAGGCATTACACCATGATATCTATATCACAACAAACAGGTCCTTTTCCAGTAGGAGACAAACAAAATAAATTACATGGTATGGATACTCAGATATTAATAGATGCCTTAGCTGCATGTCGTTTACCAACATTTGATTACTTAGTAGAAAGGATGTGTTCATTATGTTATGAGAGAGCTTGGTATGCAAAGGTTGGAGGATGTCTGGCAATCAAGTTTATGTACGAGAGGATGGCCTTGAACTGGGTATTAGAACACCAGTTTTCATTTCTTAAGGCTTTACTCTTTGTTATGATGGATTTGACAAAGGAGGTATCTAGTGGGGCTGTAGATTTAGCAAAACATAATCTGGAAAATATGTTAGTGAAGTGTTCTCAAGAAATAACTGTCACCAAAGAAAATGAAGAAATACTTGCTGCACAGAAGAAATCATTCCATGAAGTTACACATGAGTTAGTTAGACAGATAACATCACCAAATACTATTGTTAGGGAACAGGTA

Transcript

Bpl_scaf_46063-0.7

CCGGAAAGCATTTTTGCTGCCAGTATAGCATCGTTGCTGCTGATTTGAGAGAAATGGCACCTTTTAGATTCTTTTCATTGTTACAACATTAGCATCATCAACACCTTTACATACTACATACTATCAACAGTAATTTTAACCGGTATAAGATGACGTTACCAGTAACCATGTTGGCATCGCCTCTCAGTCCGCATGATGTGACTGCCCAACTAACAACATTTAAATCCTATGTGGCATTGATAGCAGATCCAACTCCTGGCATTGTTGAGAAGAAGTTAAAGGCAGCTCAGGAATTAAGTGAAAACTTCGAGAGTGTTGTACAATCACCTCAGTATCCACAGTTTTTATGCGATGCTTTGAAAGTTTTTCTGAAAATTCTAGATGATGGAGAACCACACTTTATTGCAGAACAGAACATGCAGCAATTGCGGAAGCTGTTATTGGAAATCATTCACCGTATACCAAGTAATGAACACTTAAAGAAATATGTACAACAGATATTATCTTTGATGTTTAAGCTGTTAAAGATTGAAAATGAGGAGAATGTTATAGTTTGTTTGAGGATAATCATAGAATTACATAAACAGTACAGGCCACAGTATAATGATGAGATCAAAGACTTTTTGCAGTTTGTAAAAAATATTTACAATGGATTACCAAATCATTTGCCAAAAATATTTGAGCCTCGAAGTCAGATCAAAGTAAAAGATGTGACAGAAATAAATGTAGATCAGTTATTACAGGAGACATTTACTACTACAACTATTTTAACAGACAAGAAAAATGCTGATAATCAAAATATTTCTTACAACATCATACCAAAAGGAACCTTATCACTGAAAGTTCTGGCAGAATTACCCATTATTGTAGTATTAATGGCAAGCCCATCATTTAACAAGGAGATATTTGTAGACTTTATAGCAGCTCAGATTAAAACTTTATCTTTCCTAGCTTATATCATTAGAATTTACCAGGAACAAGTTCAAGCTCATTCTGCACAGATGGTAAAGGGCCTTCTGGGATTGTTGACATTTTGTCCACAGGAAGTAGCACATCTAAGAAAAGAATTGTTGATAGCTGCTAGACATATCTTAGCAACAGATCTCAGGAATAAATTTGTATCCTGTATTGACCAACTGTTTGATGAAAATGTGTTAATTGGAACAGGATGGACAACTTATGAATCTCTCAGACCACTGGCTTACAGTACACTAGCAGATTTAGTACATCATGTAAGACAAGCTTTACCACTCAATCATCTATCACTGGCTGTCAATCTTTTCTCTAAGAACGTCCATGATGATTCTCTTCCCAGCAGTATACAAACAATGTCGTGTAAACTTCTGTTGAATTTGGTAGAGTGTATCCGTGCTAAAAGTGAACAGGACAACGGAAATGGTAGAGAACTGCTAATGAGAATGTTAGAAGTGTTTGTACTTAAGTTTAAATCTATAGCTAAAATTCAACTCCCACAGATTCTTCAAAAATGCAAACAACAGCCACAGAATACACAGACGTCAACTTTTGATACCAAAGTAGATACTAAAGTAGACACAAAACCTGTATTAGAACCACAGAAACAACCCTCCCCTGACGCTGGTCTAGATAATAAACTGCCATCGTCTTCACTCAGTGATCCATTGTCTAAAGATAAAGATGACAAAGTGTGGCCTGACAAATCAACCAATAGATTTGGTATTACTCCAGGACAGACCAGTACTTACACAGTCAATGATTGTCGTAGTCTTGTCAAGACATTAGTGTGTGGTGTCAAAACTATCACGTGGGGAATAGTCTCTTGTAAAACTACAGGCACAGAGGCTACTACTGTACCTGCTAAACAGTTTTTACCAAAAGAAACATTAGTGTACATTAGACTGGTGAAGTATGCTCTACAGGCATTAGATATATATACAATTAATGTATCACCTACAGGACAGGCTGTAATAAGACCAGCTGTAGTACAAAGTGTAAGAACAAAAGAAGAAAAAGAAGTGTTAGAACATTTTGCTGGTGTGTTTAATATGATGCATACTTTGACATTCAAAGAAATATTTTCTACAACAGTTGAGTACATGGTTGACAGAATACACAACAATTATGCATTACAGATTGTAGCTAATTCTTTCCTGGCCAATCCTACAACATCTCCTACGTTTGCTACAATACTGGTAGATTATTTACTGGCTAGATTAGAAGAAATGGGATCTAACATGGATAGATCTAATTTGTACCTGAAGTTGTTCAAGCTTGTATTTGGTTCTGTTTCTTTGTTTGCTGCAGAGAATGAACAGATGTTAAAGCCTCATTTACATGTGATTGTAAACAGATCAATGGAGTTAGCTATGAGTGCCAAGGAACCATACAACTACTTCCTGTTACTGAGGGCATTATTTAGATCAATAGGTGGAGGAAGTCATGATCTTCTTTACCAGGAATTTCTACCCTTACTACCAAACTTATTACAAGGATTAAACAGTTTACAAAGTGGATTACATCGTCAACACATGAAGGATTTATTTGTAGAGTTATGTTTGACTGTACCAGTCCGTCTTAGTTCTTTGTTACCATATCTACCAATGTTAATGGACCCATTGGTTTCTGCTCTAAATGGATCACAGACTCTTGTTAGCCAGGGTTTAAGAACACTGGAATTATGTGTAGATAATTTACAACCAGATTTTTTGTATGATCATATACAACCAGTTAGGGCTGAACTGATGCAGGCTCTTTGGAAAACGTTGAGGAATCCTGTTGACAACATAGCACATGTAGCCTTCAGGGTTCTAGGAAAGTTTGGTGGTGGTAATAGAAAGATGCTAAGAGAACCTCAAAGACTTCAGTATAATGACAAGGAAACAGCAGGTCCATGTATTACGATTTACTTCCAGGATTCTAAAACACCTGTAACCTTACCTGTAGAAAAGGCAATAGATGCAGCCCTCACAGCATTGAAGTGTAGCACAACAGAAAACTTTGTACGACGTCAAGCATGGGAACTCATTAAATGTTTCCTGGTGTCTGTAATGAATTTAGAGGATGACAAACAGACACTGACATACCTCTTCACTCATACCAGTTTTACAGAAAATGATGTTCCACTTCAGACTGGTCCCCTGTATAAAACTCCTGATTCTCACTCCAGAAAAGTCCATGAGCAAGCCTTGACAGGGATGTTTGTTGCAGCTGCCATTAAAGAACTACGGCAAACAGCACTGCCATTCATGGCATGTATGGTCAGGCATTACACCATGATATCTATATCACAACAAACAGGTCCTTTTCCAGTAGGAGACAAACAAAATAAATTACATGGTATGGATACTCAGATATTAATAGATGCCTTAGCTGCATGTCGTTTACCAACATTTGATTACTTAGTAGAAAGGATGTGTTCATTATGTTATGAGAGAGCTTGGTATGCAAAGGTTGGAGGATGTCTGGCAATCAAGTTTATGTACGAGAGGATGGCCTTGAACTGGGTATTAGAACACCAGTTTTCATTTCTTAAGGCTTTACTCTTTGTTATGATGGATTTGACAAAGGAGGTATCTAGTGGGGCTGTAGATTTAGCAAAACATAATCTGGAAAATATGTTAGTGAAGTGTTCTCAAGAAATAACTGTCACCAAAGAAAATGAAGAAATACTTGCTGCACAGAAGAAATCATTCCATGAAGTTACACATGAGTTAGTTAGACAGATAACATCACCAAATACTATTGTTAGGGAACAGGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20175	Tra1_central	Tra1 HEAT repeat central region	Repeat	Interproscan
PF20206	Tra1_ring	Tra1 HEAT repeat ring region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046805	Repeat	Tra1, HEAT repeat ring region	Interproscan
IPR046807	Repeat	Tra1, HEAT repeat central region	Interproscan
IPR050517	Family	DNA Damage Response and Repair Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000124	Cellular Component	SAGA complex	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08874	TRRAP; transformation/transcription domain-associated protein	-	HTLV-I infection	ko05166	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_46063-0.7 global RNA-seq network