Gene detail

Detailed information of Bpl_scaf_44490-2.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_44490-2.6	SAM DOMAIN-CONTAINING PROTEIN-RELATED	Bpl_scaf_44490	163733	196099	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_44490-2.6

ATGAAGTTTCATTCTACTCATGGAACCTCTATAACTTTATCCTCCAACAAAACTGTTGCTATCAGAGAGGAAGGTGTTTTCTGTAATGGAATCACATTTGGAGATCAGGGAGTTAAAGTCAACCAAAAAATTTGTTTGGAATTATCGGTCTCCAAATCATGGAGTGGCGCTCTCGGAATCGGTCTAACTACAAATAATCCTTCTAAAATAAAGCCATCAGATTTACCCAGATTTGCTTTTCGTAATTTGGGCGAGAAAGAAGGATATTGGTTGAAGGCAGTTAGTGAAAATTTGCTAAGTGAAGGTTCAAAGGTCACAGTTTATTTAAGTGCCACAGGTGCCCTTCAGTTGTTTATTGACGATAACTACATTGGAGCATGTGTTATAAATATACCACTGGATAAACAATTATGGTTGGTAGTTGATGTTTATGGGAACACGACAGTTGCTAAATTTGTCAAACCAGATGAAGCTCCCAAAGAGATTCTTGCCAGAGGGCCAGATGCTGTTATTGCTTACCAAGAGGCCTGTACATCAGGAACCAAAGTTATATATCGTAGTAGACTTATGCTGGTTGGCCAAGATAGAGCGGGAAAAACTAGTCTAAAGAAAGCTTTGATTGGTCTAGAACATGATGAAAATGAAGGGAGTACAGAAGGTATTGATTTGTCATTTTCCTGTTCATTTAACCTATCACAAAGACAGGCATGGCAGGCAGCAATATCTGACAATGATGTAAAAGAACAAGTTCATGACAACGTGTCAAAAACTGATGGAGAATTGGGTTCAATTGAAGAAGAATATAACCAAGGACTAGCAGAAAATATTGTTAAAGAACTGACAAAACAGAAATCAGTTTTAAAAAGTAGAGGGTCTAGTAGAGATAGTTTAAGGATTCTGTCACTTGGAAGAAAGCCAAATAAAGACAAACAGATCAGTACAGGAAATACTAGCTCTTCAAACAGTGATCACAAAATTCCACATGAGATGGTAAACGATGTTCCTAAAAGAGTTGTAGAACTTGTACAGGAAGTGTTGGATCAACAGGAGGCACAACTTCTGTCTGAGAAAAGTAGTAAAAATAACAAAACAGATAACAAAACAGAAATACAGGAAGTTGTTGTACAAAAGAAAGAAAAAGTCAAGAAAGTGATGCTGAATATATGGGATTTTGCTGGACAAAGTGCCTATTATACCACACATCAGGTTTTTCTAGCATTTCGAGCAGTGTATCTTATAGTATTTAATCTCTGCCTTGATTTGTATGATGTAACCAATTCTTCACAGGCTGACTGTAAGATGTGTACATTGGACTTCATGGATTACTGGTTAAAGACAATCTATACTCACACATCAGACAATACTAATTGTAGTGTACACAACACACGACTATCACCACCAGTTTTTATAGTGGGGACTCACAGAAACAGTCTGGCTTCTGATTCAGAGATACAGGAGATGCTGGTTGAAGAAAAGTTTTCTGTGATACGAGAGTTTCTGATGGATAAACCGTACACACAACATATAATTACACCATTCATAGCTGTGGAGAACAGTTTGGGTGTAGGAATAGATCAGCAGATTGATCAGTTAAAACAGAAGATAGAGGAGGTTGCTGAAGAGGAACCATACATGGGAGAAACCATTCCACTAAAATGGCTGAAATTTGAACAAGAAATTTCTAAATTAGTACAAAAAGGGACCAGTTATGCTTCCTACAATCAGATACAAGAAGTTGCTAACAACATAGGAGTTAATACCAAAGAGGAATTCAAAACAATGTTAGAGTTTTACCATGATCTGGGTTGGAATCTTTCCAAAGATAAATGGAAAATGTTAAGAGAAAAAGGGAAATTAGATGAAAGTTTAATTGATAATTTGTGGAAAGACGTACTTGATGAAAAGCCGTTGTTATTAGAACTAATGAAAAAGTTTGATTTGATCTGTGAATGCCTTCCTGTAGACATGGAGGTTGGATGTACAGGAAGATCAAAATCTAGATTTTTCTACATCCCTTCCAGGATAACTTACAACAACGTTGATGAGAAGCTTTATACCCCTCTGTCTAGTCATGTTGTCTTCTTCTTTAACTTTAATGGATACTTGCCTGAGGGTGTTTTTCATCGAATCATTACAAGAACCATATGTTGGTGTCAGGATACTACTGGTAAAGAGCCTCATGTAATGACAAGTCATGTAGTCAGATTTTATTTGGATCCTGAACATGACTTTGTTCTGGAGATGGCACCTAGGAAATGTCACAGGATAAAGGTTGTTGTAATAAAGGTCACCAACATTGACAATGAACCAGATGTAGAAGGTGAGGGTACAGAACATAATAACATGGAAGAAAATCTTACTTTGCCCAACCCAAACATCTGTGCTAAGTTGAGAAACTACTTAGAAACCACACTCTTTGAGTTAAAGGATATCTGGGTGAAGCGATTAAAATATTCAACATGCATCCAGTGCCCATGTGACAAACCATGTGATCTCCATAACAAGTCCAATTGCAACGATGAAGAATGCATTCACTTCTTAAACCTTGATGAATGCCTCACTTCTAAGGTAGTATGCTGTAATTACAGAAGAGTGAAAACAAACCACATCAAGAAATGTTTCCCTGAAACAGTCTCACTGGGGTTACAAGGCAAAGTATTACCCCAGATAGACTTAGAAAATGGAAATATTGACAAATATAGTTCACAGCTTCCAATGTGGGTGAAAGGTGCTGCAAAACTCCTGAATTCTGGAGAGGAAAATGAAGATTGGATTGCTTTGTCTAAATTAATGGGCTATAAAGAAGAACAGATAGATATGTTAATGGACAATACAAACCCATCCCTGGCATTGCTAGCTGACTGGATTATGGCTGGTGGTAATACTGGACTAGCAGTTGATATGTTGATTGGATATTTAGAGACTTTAGACAGAGATGATGTCGTAGAGGTTATAACTAGTGCAAGAGTTGAATCAAATCAGGACCTTCCACAAGTATTTATCAGTTACCAGTGGGATATTCAAAATGAGGTCAGCCAGTTACGAGACAAGCTTGAGAAAGCAGGGTTCTCTTGTTGGATGGACATCGGTCAGATGGGTGGAGGTGATCAACTTCGGAGCAAAATAGATAGTGGTGTGAGACAATGCAAA

Transcript

Bpl_scaf_44490-2.6

AGATCTGTGAGATGAAGTAAGCAAAAGCAATGTAACAAATACAAGTTGATCTAGGAAGAGGCTGGCATGAAGTTTCATTCTACTCATGGAACCTCTATAACTTTATCCTCCAACAAAACTGTTGCTATCAGAGAGGAAGGTGTTTTCTGTAATGGAATCACATTTGGAGATCAGGGAGTTAAAGTCAACCAAAAAATTTGTTTGGAATTATCGGTCTCCAAATCATGGAGTGGCGCTCTCGGAATCGGTCTAACTACAAATAATCCTTCTAAAATAAAGCCATCAGATTTACCCAGATTTGCTTTTCGTAATTTGGGCGAGAAAGAAGGATATTGGTTGAAGGCAGTTAGTGAAAATTTGCTAAGTGAAGGTTCAAAGGTCACAGTTTATTTAAGTGCCACAGGTGCCCTTCAGTTGTTTATTGACGATAACTACATTGGAGCATGTGTTATAAATATACCACTGGATAAACAATTATGGTTGGTAGTTGATGTTTATGGGAACACGACAGTTGCTAAATTTGTCAAACCAGATGAAGCTCCCAAAGAGATTCTTGCCAGAGGGCCAGATGCTGTTATTGCTTACCAAGAGGCCTGTACATCAGGAACCAAAGTTATATATCGTAGTAGACTTATGCTGGTTGGCCAAGATAGAGCGGGAAAAACTAGTCTAAAGAAAGCTTTGATTGGTCTAGAACATGATGAAAATGAAGGGAGTACAGAAGGTATTGATTTGTCATTTTCCTGTTCATTTAACCTATCACAAAGACAGGCATGGCAGGCAGCAATATCTGACAATGATGTAAAAGAACAAGTTCATGACAACGTGTCAAAAACTGATGGAGAATTGGGTTCAATTGAAGAAGAATATAACCAAGGACTAGCAGAAAATATTGTTAAAGAACTGACAAAACAGAAATCAGTTTTAAAAAGTAGAGGGTCTAGTAGAGATAGTTTAAGGATTCTGTCACTTGGAAGAAAGCCAAATAAAGACAAACAGATCAGTACAGGAAATACTAGCTCTTCAAACAGTGATCACAAAATTCCACATGAGATGGTAAACGATGTTCCTAAAAGAGTTGTAGAACTTGTACAGGAAGTGTTGGATCAACAGGAGGCACAACTTCTGTCTGAGAAAAGTAGTAAAAATAACAAAACAGATAACAAAACAGAAATACAGGAAGTTGTTGTACAAAAGAAAGAAAAAGTCAAGAAAGTGATGCTGAATATATGGGATTTTGCTGGACAAAGTGCCTATTATACCACACATCAGGTTTTTCTAGCATTTCGAGCAGTGTATCTTATAGTATTTAATCTCTGCCTTGATTTGTATGATGTAACCAATTCTTCACAGGCTGACTGTAAGATGTGTACATTGGACTTCATGGATTACTGGTTAAAGACAATCTATACTCACACATCAGACAATACTAATTGTAGTGTACACAACACACGACTATCACCACCAGTTTTTATAGTGGGGACTCACAGAAACAGTCTGGCTTCTGATTCAGAGATACAGGAGATGCTGGTTGAAGAAAAGTTTTCTGTGATACGAGAGTTTCTGATGGATAAACCGTACACACAACATATAATTACACCATTCATAGCTGTGGAGAACAGTTTGGGTGTAGGAATAGATCAGCAGATTGATCAGTTAAAACAGAAGATAGAGGAGGTTGCTGAAGAGGAACCATACATGGGAGAAACCATTCCACTAAAATGGCTGAAATTTGAACAAGAAATTTCTAAATTAGTACAAAAAGGGACCAGTTATGCTTCCTACAATCAGATACAAGAAGTTGCTAACAACATAGGAGTTAATACCAAAGAGGAATTCAAAACAATGTTAGAGTTTTACCATGATCTGGGTTGGAATCTTTCCAAAGATAAATGGAAAATGTTAAGAGAAAAAGGGAAATTAGATGAAAGTTTAATTGATAATTTGTGGAAAGACGTACTTGATGAAAAGCCGTTGTTATTAGAACTAATGAAAAAGTTTGATTTGATCTGTGAATGCCTTCCTGTAGACATGGAGGTTGGATGTACAGGAAGATCAAAATCTAGATTTTTCTACATCCCTTCCAGGATAACTTACAACAACGTTGATGAGAAGCTTTATACCCCTCTGTCTAGTCATGTTGTCTTCTTCTTTAACTTTAATGGATACTTGCCTGAGGGTGTTTTTCATCGAATCATTACAAGAACCATATGTTGGTGTCAGGATACTACTGGTAAAGAGCCTCATGTAATGACAAGTCATGTAGTCAGATTTTATTTGGATCCTGAACATGACTTTGTTCTGGAGATGGCACCTAGGAAATGTCACAGGATAAAGGTTGTTGTAATAAAGGTCACCAACATTGACAATGAACCAGATGTAGAAGGTGAGGGTACAGAACATAATAACATGGAAGAAAATCTTACTTTGCCCAACCCAAACATCTGTGCTAAGTTGAGAAACTACTTAGAAACCACACTCTTTGAGTTAAAGGATATCTGGGTGAAGCGATTAAAATATTCAACATGCATCCAGTGCCCATGTGACAAACCATGTGATCTCCATAACAAGTCCAATTGCAACGATGAAGAATGCATTCACTTCTTAAACCTTGATGAATGCCTCACTTCTAAGGTAGTATGCTGTAATTACAGAAGAGTGAAAACAAACCACATCAAGAAATGTTTCCCTGAAACAGTCTCACTGGGGTTACAAGGCAAAGTATTACCCCAGATAGACTTAGAAAATGGAAATATTGACAAATATAGTTCACAGCTTCCAATGTGGGTGAAAGGTGCTGCAAAACTCCTGAATTCTGGAGAGGAAAATGAAGATTGGATTGCTTTGTCTAAATTAATGGGCTATAAAGAAGAACAGATAGATATGTTAATGGACAATACAAACCCATCCCTGGCATTGCTAGCTGACTGGATTATGGCTGGTGGTAATACTGGACTAGCAGTTGATATGTTGATTGGATATTTAGAGACTTTAGACAGAGATGATGTCGTAGAGGTTATAACTAGTGCAAGAGTTGAATCAAATCAGGACCTTCCACAAGTATTTATCAGTTACCAGTGGGATATTCAAAATGAGGTCAGCCAGTTACGAGACAAGCTTGAGAAAGCAGGGTTCTCTTGTTGGATGGACATCGGTCAGATGGGTGGAGGTGATCAACTTCGGAGCAAAATAGATAGTGGTGTGAGACAATGCAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF07177	Neuralized	Neuralized	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR006573	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47508	SAM DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_44490-2.6 global RNA-seq network