| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_40855-0.5 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 | Bpl_scaf_40855 | 46951 | 77942 | + |
| CDS | |||||
| Bpl_scaf_40855-0.5 | |||||
| Transcript |
| Bpl_scaf_40855-0.5 |
| Protein |
| Bpl_scaf_40855-0.5 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04981 | NMD3 | NMD3 family | Family | Interproscan |
| PF21192 | NMD3_OB | NMD3 OB-fold domain | Domain | Interproscan |
| PF21193 | NMD_SH3 | NMD3 SH3 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007064 | Domain | Nmd3, N-terminal | Interproscan |
| IPR039768 | Family | Ribosomal export protein Nmd3 | Interproscan |
| IPR048898 | Domain | 60S ribosomal export protein NMD3, OB-fold domain | Interproscan |
| IPR048899 | Domain | 60S ribosomal export protein NMD3, SH3 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12746 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000055 | Biological Process | ribosomal large subunit export from nucleus | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0043023 | Molecular Function | ribosomal large subunit binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K07562 | NMD3; nonsense-mediated mRNA decay protein 3 | - | RNA transport | ko03013 | PMID: 28812709 |
| Ribosome biogenesis in eukaryotes | ko03008 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_40855-0.5 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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