Gene detail

Detailed information of Bpl_scaf_38716-1.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38716-1.7	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Bpl_scaf_38716	49626	99291	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_38716-1.7

ATGAGTCAGACTAGTACCTCCAGTGCTGGTAGCTGGCAGGGTGGGAGAGGATGGAGAGGTCGTGGGTGGTACAGAGGTCAGGGAGGTGGAGGAAGATACTATAAACACTATGGAAATAGAGGGAGAGGAAACTCGCAATCTCAAGGCAGAGGAGTGAGAATGATGGATGACCCCCAACCAAACAGAAGGCCTGCTTCTCAGATGGTTCAAGCTGTCATTGAGGTCCAGTCTCCATACAAAGGATGGAGATACTATTTTCCAGAAGAGGTGTACAATGATAATTCTCCAACTGTTAAGAAGGTTGAGGTGTTTGAAAAGTACTTTCTTAGCTGGTCACAGTCTTATAAGTGGGATGATGTTGAAGAAAAGGGTTACTTTATTGTTGATATGAAAGATTTATTATCAGACCAGATTATAATGGAAGGTATTCCCAAGCTATCAACAGAGATGAAAGACATGCCTGACAGAATTCTGTCTTGTATGGGGCTAGCTGTTCACCAGTTACTAACCCACAAAAGATTACAAGAAGCAGCCATTGATCCTGAAACTAGCCAATCAGATGACTGTGTATATTCAGTGCCAATAATCATAGCTAGAGTAGTAAACTTTGGATCACAGATACCATTGAAAAACTTGAAAGCAAATTATTATGGGAAATTTGTGTCTGTAAAAGGAACTGTTGTAAGAGTCAGCAATATTAAGCCATTATGTAGCAAGTTAGCCTTCGAATGTGTGACTTGTGGAACTGTTCAGAGTGTCACTCTACCTGATGGTAAATACACAGTACCTACCAAGTGTCCAGCTCAGGACTGTAGAGGCAAAACCTTTTTTCCCAAGAGAAGTTCTGACCTGACTAGGACTATTGATTGGCAGACAATTAGAGTACAAGAAATTATGGTGGATAGACAAAAAGAGACTGGAAGAATACCAAGAACAATTGACTGCGAACTCACTCAAGATTTGGTTGATAGCTGTGTACCAGGTGATGTTGTTACTATTTCTGGTATGGTGAAAGTCAACAGTGTTGATGAAGGAAAGGGAAGAAACAAGGATAAGTGTATGTTTTTGTTATATGTGTATGCTAACTCTGTTGTCAATGCCAAGGGCAATAAATCTGGTGACAACTCGGGACTAGCCATGGAATTTACCATGAAAGAATTGTATGCTATTGAAGAAATCCAAAGTGACAAAAATCTTTTTAGGTTACTTGTTGGGTCTATTTGTCCATCTATATATGGCCATGAGTTAGTGAAGGCTGGTTTGACGCTTGGATTATTTGGTGGCAGTCATAAATATACTAATGATAAGAACAGAATTCCAGTAAGAGGAGATCCACACATACTGGTTGTTGGAGATCCAGGTTTAGGAAAGAGTCAGATGTTACAGTCAACAGCTAGTATAGCCCCTAGAAGTGTTTATGTCTGTGGCAACACTACTACTACCTCTGGTCTCACTGTGACTTTATCCAGAGATGGAGGTTCAGGTGACTTTGCATTAGAAGCTGGAGCTTTGGTGTTGGCAGATCTTGGCTGCTGTTGTATAGATGAGTTTGATAAAATGGGAAATCAACACCAAGCCTTGTTGGAAGCAATGGAACAACAGAGTATAAGTATTGCTAAAGCAGGGATTGTTTGTAGTTTACCAGCTAGAACCTCAATATTAGCAGCAGCTAATCCAGTAGGAGGTCACTATAACAAGGCTAAAACTGTCTCTGAGAATCTAAAAATGGGGAGTGCTTTATTGTCAAGATTTGATTTAGTATTTATACTGTTGGACAAACCAGATGAGGAAATGGACAGTATGTTGTCAGACCATGTGATGGCTTTACATGCTGGTAGTAACAGACCATTAAGTGTAACAGTTAGGAGACAGAAGGATGACAGTATAAACGAGTCAATATTACTGACGGAGTCTGACAAACCGTTGAGTGATAGATTAAAGACACCTAGACATGAACCATTTGATCCTATTCCACATCAGTTACTTAGAAAGTATATTGGATATGCTAGAAAGTATGTCCATCCAAAAATAGGACCAGATGCTGCTAAAGTTATACAGGAATTCTACTTAGAATTAAGAAAACAACATCAGACACAAGACAGTACCCCTATAACAACAAGACAACTAGAATCATTGATAAGATTGACAGAGGCTAGAGCTAGACTAGAACTTAGAGAAGTAGCTACCAAAGAGGATGCTGGAGATGTCATAGAAATCATGAAATACAGCATGGTTGACACTTACACTGACCAGTTTGGTGGTCTTGATTTTAAAAGATCCCAGCATGGTTCTGGAATGAGTGGACGGTCACAACCTAAACGATTTATAGCTGCTCTACAGAAAGTATCAGAACAGACGTATAACTCAATATTTACTGTACAACAGATGAGACAGATTGCAAAGGAGTGTGGTGTACAGGTACTTGATTTTGAGGGATTTATTAGCTCATTGAACAACCAGGGATTTTTGTTGAAGAAAGGTCCGAAAGTGTTTCAACTCCAGACATCATGTTTTTAG

Transcript

Bpl_scaf_38716-1.7

GCGGGAAATTAGAAAGTGAAAGTAGAGATTTCATTTCTCATATGTCGATATGATTTAAAGTATTTACTGTTATAGTTAACATCTGGAAATGAGCATTAACTTCAAAAACTATTCACGATGTAGAATGCAAGAATGAGTCAGACTAGTACCTCCAGTGCTGGTAGCTGGCAGGGTGGGAGAGGATGGAGAGGTCGTGGGTGGTACAGAGGTCAGGGAGGTGGAGGAAGATACTATAAACACTATGGAAATAGAGGGAGAGGAAACTCGCAATCTCAAGGCAGAGGAGTGAGAATGATGGATGACCCCCAACCAAACAGAAGGCCTGCTTCTCAGATGGTTCAAGCTGTCATTGAGGTCCAGTCTCCATACAAAGGATGGAGATACTATTTTCCAGAAGAGGTGTACAATGATAATTCTCCAACTGTTAAGAAGGTTGAGGTGTTTGAAAAGTACTTTCTTAGCTGGTCACAGTCTTATAAGTGGGATGATGTTGAAGAAAAGGGTTACTTTATTGTTGATATGAAAGATTTATTATCAGACCAGATTATAATGGAAGGTATTCCCAAGCTATCAACAGAGATGAAAGACATGCCTGACAGAATTCTGTCTTGTATGGGGCTAGCTGTTCACCAGTTACTAACCCACAAAAGATTACAAGAAGCAGCCATTGATCCTGAAACTAGCCAATCAGATGACTGTGTATATTCAGTGCCAATAATCATAGCTAGAGTAGTAAACTTTGGATCACAGATACCATTGAAAAACTTGAAAGCAAATTATTATGGGAAATTTGTGTCTGTAAAAGGAACTGTTGTAAGAGTCAGCAATATTAAGCCATTATGTAGCAAGTTAGCCTTCGAATGTGTGACTTGTGGAACTGTTCAGAGTGTCACTCTACCTGATGGTAAATACACAGTACCTACCAAGTGTCCAGCTCAGGACTGTAGAGGCAAAACCTTTTTTCCCAAGAGAAGTTCTGACCTGACTAGGACTATTGATTGGCAGACAATTAGAGTACAAGAAATTATGGTGGATAGACAAAAAGAGACTGGAAGAATACCAAGAACAATTGACTGCGAACTCACTCAAGATTTGGTTGATAGCTGTGTACCAGGTGATGTTGTTACTATTTCTGGTATGGTGAAAGTCAACAGTGTTGATGAAGGAAAGGGAAGAAACAAGGATAAGTGTATGTTTTTGTTATATGTGTATGCTAACTCTGTTGTCAATGCCAAGGGCAATAAATCTGGTGACAACTCGGGACTAGCCATGGAATTTACCATGAAAGAATTGTATGCTATTGAAGAAATCCAAAGTGACAAAAATCTTTTTAGGTTACTTGTTGGGTCTATTTGTCCATCTATATATGGCCATGAGTTAGTGAAGGCTGGTTTGACGCTTGGATTATTTGGTGGCAGTCATAAATATACTAATGATAAGAACAGAATTCCAGTAAGAGGAGATCCACACATACTGGTTGTTGGAGATCCAGGTTTAGGAAAGAGTCAGATGTTACAGTCAACAGCTAGTATAGCCCCTAGAAGTGTTTATGTCTGTGGCAACACTACTACTACCTCTGGTCTCACTGTGACTTTATCCAGAGATGGAGGTTCAGGTGACTTTGCATTAGAAGCTGGAGCTTTGGTGTTGGCAGATCTTGGCTGCTGTTGTATAGATGAGTTTGATAAAATGGGAAATCAACACCAAGCCTTGTTGGAAGCAATGGAACAACAGAGTATAAGTATTGCTAAAGCAGGGATTGTTTGTAGTTTACCAGCTAGAACCTCAATATTAGCAGCAGCTAATCCAGTAGGAGGTCACTATAACAAGGCTAAAACTGTCTCTGAGAATCTAAAAATGGGGAGTGCTTTATTGTCAAGATTTGATTTAGTATTTATACTGTTGGACAAACCAGATGAGGAAATGGACAGTATGTTGTCAGACCATGTGATGGCTTTACATGCTGGTAGTAACAGACCATTAAGTGTAACAGTTAGGAGACAGAAGGATGACAGTATAAACGAGTCAATATTACTGACGGAGTCTGACAAACCGTTGAGTGATAGATTAAAGACACCTAGACATGAACCATTTGATCCTATTCCACATCAGTTACTTAGAAAGTATATTGGATATGCTAGAAAGTATGTCCATCCAAAAATAGGACCAGATGCTGCTAAAGTTATACAGGAATTCTACTTAGAATTAAGAAAACAACATCAGACACAAGACAGTACCCCTATAACAACAAGACAACTAGAATCATTGATAAGATTGACAGAGGCTAGAGCTAGACTAGAACTTAGAGAAGTAGCTACCAAAGAGGATGCTGGAGATGTCATAGAAATCATGAAATACAGCATGGTTGACACTTACACTGACCAGTTTGGTGGTCTTGATTTTAAAAGATCCCAGCATGGTTCTGGAATGAGTGGACGGTCACAACCTAAACGATTTATAGCTGCTCTACAGAAAGTATCAGAACAGACGTATAACTCAATATTTACTGTACAACAGATGAGACAGATTGCAAAGGAGTGTGGTGTACAGGTACTTGATTTTGAGGGATTTATTAGCTCATTGAACAACCAGGGATTTTTGTTGAAGAAAGGTCCGAAAGTGTTTCAACTCCAGACATCATGTTTTTAGTGAAGGAGAATAAAAACATTCAGACATTAACTGTAAAAGTACAATTAGAAATATCATATATATGAATTACGGTTATACACTTGACCTACAATCAGTACATTACTCATACCTGTTAACCCTCCCGCATTTCGCGGGAGACTCCCGCTTTTGAGCTCGGCCTCCCGCAAAGAATGTGCCTCCCGCGCGGGAGACTAAAAACTCCCGCTTTGAAATACTTCTCCCACATTATCTCCCGTGACCATAACTTTGATTAAAATCGAAAAATTGGACGCCATTTTTGTTGTTTTTATCAGCTGGGTCATTAAAACGTTTGCGTGAATCAGCTGATTGTTACTCGGAATACTCTCGGTTTTTACTAGAAACGCCGATAATGTAAGTTGTTTACAATATCGAATGGATAGCTACACGAATCAAAGTTGTGGAAAAAGAAAATTTGAAGGCGAATATCGTTCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00493	MCM	MCM P-loop domain	Domain	Interproscan
PF17207	MCM_OB	MCM OB domain	Domain	Interproscan
PF17855	MCM_lid	MCM AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001208	Domain	MCM domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan
IPR033762	Domain	MCM OB domain	Interproscan
IPR041562	Domain	MCM, AAA-lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0042555	Cellular Component	MCM complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10737	MCM8; DNA helicase MCM8	EC:5.6.2.4	DNA replication proteins	ko03032	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38716-1.7 global RNA-seq network