Gene detail

Detailed information of Bpl_scaf_38714-1.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38714-1.5	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	Bpl_scaf_38714	156465	177060	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38714-1.5

ATTAACTGTAGTCTGATAATTGTTTAAATATCATGAAAAGATATATTTAGTCACATAAAAAGCCACACATATGTATTTCAAGAAGTGAATTTGTGATTGATTTGCTAGACATGTCGGGAGCTCTGTGTATACTGTTATGTATTCTTGGATCATTAGTGGCTGTTTTACATGGCGAAATATTTACATCTGTATATAAACTATCAATATTGGCCCGGGAGGAGGGCACATTATTGAAAGCATTCACAGCATACATCGCTGATAAAGGAAAGGATGGGGAAACAATTTCTTATGAGCTGCAAAGATTAATAAACGACTTAGAACCACTAGTGTCTGAAAGTTGCCTGATGCCATCATATGTAGAGAACCCAATAAATTCCTACCATCTGATTGGTCGATTTGTCTACAAATGGCCAGCTGTTTATAAGAATATTCTATGTGAAGCGTGTGACGTAGATATACATGCAGAACGTTTAAATAAAACATTTCAAGAAGTTGGTTCTCATATAGTACATTGGCCAGATGAATATGATGTCAAATCAACGGCGGACGCGCTTTTGCGCTTGCGTGTATTTTATTACCTTAACATTGAAGAACTCATAGACGGCAAACTGGGTAGCGATATTGTTCTTGCATTAAATCCGTCACAAGTTATCAAAATAATCAACCTGGCAGTTGAGAGTAGCATGTTAAATGAAGCTATGCTTTGGTGTGAAGCCTTATTATGGAAGATCTCGTTTAATTCTCATCAAGACGAGACTATAAATATGTTTTCATTGTTACGCCTGCTTGCCAGTATATACAATAAGGCTGGAATGCCAAAAAGAGCAGCACATATTTTGTCTGATCATACAAGTGCAGGAAACAGTGATATAAACAACGATTATGAACTGTACAACAAACAGGCAAACACAACAGAAGAACAAGAGAACATTTCATTGGTTCCAATAGAATATGATGACGAATACAAACATTTATGTAGAGAAAACAGAAAGGATGCCGCTGATCTGTCAGTACTATACTGTTACTATAGCAACACGACGATCCCATATTATAAAGGGAAAGTAGAGGTCGTGAACTTGCATCCAAAGATAGTTTTATTCCACGATGTTTTATCAGAAGCAGAAATTAGTTATCTCCGTAACGAAGGCAGGAAGAAGTTTCAAAGATCTCAACTTGTTGGTGAAACTGATAAAGCAATGGTAGATAGAGTGCGTGTCAGTGAAACTTCTTGGGTCCATGATGCACCAGGTGTAATCAAAAGAGTTACAGACCGTGTTAGTCTTTTAACAGGATTAGCTACACTTAATTGCACAGAACCATATCAAGTTGTTAATTATGGTATAGGAGGAATGTACCATCCACACCTAGATGCATTAGAAACAGATATGAAAGATGACGACGTATTATATAAATTTGGAGATAGAATAGCTACTTGGATGTTTTACTTAAATGATGTAACAGCAGGAGGAGCCACTGTTTTTCCACAAGTCAATGCACGAGTACCCGTAGTAAAGGGTGGCGCTGCCTTTTGGTATAATTTACTGCCGAGTGGCGAATGTGATAAACGAACATTACATGCTGGTTGTCCGGTATTACTGGGTTCTAAATGGATTGGAAATAAGTGGATAAGAGAAGCGGGACAAATATTTAAAAGACCATGTGACTTACAACCTTGACACCGGAATAGTAGAGCATACTGAAAAGGGTGGTGGGGTGAACGTAACTGTATTTTTTATGCCTTTTTTCAAAAGTAACGGATTGAATCATTCAGTCTTGTAAATATGACAAATAATAAAGACATATATAAAACAATTGTAAATATTTCGCCTATACGTCTGTATATATATTCTTGATTTCCCTTTCTGTAACGTATACTGCTTTATGTTGCATATCAATTCGTCGGTTTCCGGGATACTGGTATTCAGATAATACCGTCATGTGACTTCCAACACCACGTGACTAAAATCTAGGCATCTTTTGTTCAAAATGGCCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08336	P4Ha_N	Prolyl 4-Hydroxylase alpha-subunit, N-terminal region	Family	Interproscan
PF13640	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013547	Domain	Prolyl 4-hydroxylase alpha-subunit, N-terminal	Interproscan
IPR044862	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR045054	Family	Prolyl 4-hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10869	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004656	Molecular Function	procollagen-proline 4-dioxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0018401	Biological Process	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00472	P4HA; prolyl 4-hydroxylase	EC:1.14.11.2	Arginine and proline metabolism	ko00330	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38714-1.5 global RNA-seq network