Gene detail

Detailed information of Bpl_scaf_38288-7.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38288-7.5	SEL-1-LIKE PROTEIN	Bpl_scaf_38288	726969	759190	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_38288-7.5

ATGAAAATATCTGACTTGCATCATTACATTGGAACATGTACATGTAGACAACACACATTTAGATGGACTGTTCTTATTTTCCTCTTTGTCTTTCTGTTGTGTATATCAACTATACATGCTAACAATCCAAATTCTGACAAGAAATCTGATGCTAGTGATAAAGAAACAAGTAACCCAAATATTCAAGAGGATACTAAGATACAGCAACCCATTCCTAGTCATATACATGGGACTGAAAATGAAATAAAAGAGACAAATGTAGAAAATAAACAGGATGATAATTTAACTGAAAATATAAAGCAACCTGGTCCTAAAGAACAAATTGGTGATGCTCATAAAAATGATAAAGAGGAAGTTGATCCTCATGCACAACAACTTCCCTCTTCAGAGAAAGGAGAGGGCTTTCAGTCTGGTGCTATTGGATCTAATATTCAGTCAGATAAGGAAGGAGGATCACAGGAGGATAAGAAACAGACAGAAACAAGTCAAAATATTTTGACCGATAATAAACAACTAGATCCCAGTCAAAGTAAATTACCAAGTGATAACAAGAAATTAGAGGAAGTTGAAACCAAGAAAAATTTTGATGCCACAAAGAGTGAAGAAGAATTACATAAATGGTTAGATGAACGTGTTGTAAATGTGGAGACTGAAAAAGAAGAGGTTAAATTGAAATCCACTGTAACTAAATCAGAGGAACCTATTGTTCAGGAAGAAGAGAGCTATGACTCAAAAGCAGAAAAACAAAAAGAAGAAAGTACAGAGGAAAAGGAGCTGACACCAGAAGAACTTAAAGCTGAAGAATATTACAGTCAAGGAGAATCTTTTATCAATGAAACATTCCTGAAAGATTACCATCAGGCTCACCGATTCTTCAAGCTGGCTGCTGATTTGAACCATACAAAAGCTTTAGAATACATAGCATTTGCCTATCTGTTTGGAGATTATCTTCCTCAAGACATCGAAAAAGCAAAGGAGATATTTATAGATCTGTCCAATAGAGGGTCACCAAGGGGACAATTGGGTATGGGATTTCTTAGTAGTGCAGGGATTGCTTTCAATTCTAGTCAAGCTAAGGGTTTGATATACTACACGTTTTCTGCACTAGGTGGTGATCCCTTGGCACAAATGACATTAGGTTACAGATATTGGTCTGGTATTGGAGTAGAGACTAAATGTGAATCAGCTTTAACATACTACAAAAAAGCAGCATCAACAGTTGCTGATGCTGTGACATTTTCAAGTGGTCCTGCTATACAGAGAATTAGAATACATGAAGAAGTTGAAAACCATAACTCGGGTCAAAGTTCACTCATGGATGATGATTTACTGCAGTACTATCATTTTCTAGCTGATAAAGGAGATGTTCAGGCTCAGGTTGTTCTAGGTCAACTTTATTACCAAGGAGGCAGAGGAGTTCCAGTTGAACATGAGAGAGCAAATCATTATTTCCTTATGGCTGCAGAATCTGGTAATGCTAATGCTCTGGCATATCTTGGAAAGATGTATACAGAAGGCAGTCCTGTAGTTCAACAAAATAATCAAACAGCACTGGTATATTTTAAAAATGCTGCCGATAAGGGCAATTCTATAGGTCAGACTGGACTAGGAATGATGTACATGTATGGGAAAGGTGTAACAAAGGATTATAATAAAGCCTACAAGTACTTCCAATTAGCAGCAGATCAAGGATGGGTGGATGGACAATTACAGCTAGGAATTATGTACTTCAGTGGAAAAGGAGTTAGACGTGATTATAAGATGGCAGTGAAATATTTTAACTTAGCAGCTCAAGGAGGCCATGTATTAGCTTATTATAACCTAGCACAGATGCATGCAACAGGAACTGGTGTACTGAGGAACTGTCATACAGCTGTTGAGTTTTTCAAAAATGTAGCAGAGCGTGGACGTTGGGCTGCCATGTTACAAGAAGCACACAGTCTTTATAAAGAAGGAAATACACACCAATCACTGATGAAGTATACATTTTTAGCAGACCTTGGATATGAAGTAGCACAGTCAAATGTAGCGTATATTTTGGATAATGGTGAAGTAGGTTTATTTGTGGAAGATGAAATATATCAGAGAGCTTTACTACACTGGGGCAGAGCTGCATCACAAGGATCTACGATAGCCAGACTGAAGATGGGGGATTATCATTACTATGGTTATGGTACCAAAGTAGACTATGAATCTGCTGCTGGTCAGTACAGACTGGCATCAGAACAACAACATAACGCTCAGGCTATGTTTAACCTGGGATACATGCATGAACAAGGACTAGGTCTAAAACAGGATTTACATTTAGCCAAGAGGTTTTATGATATGGCTGCAGAAACCAGTATAGATGCTAAAGTCCCTGTGATGCTAGCTTTATTTAAATTAGGATTATTTTATGGTGCTGATGTTTTCAATAAAGAAATTGAAGAGATGAATAATTTTTTCCAGAAATTAGATCCAAGATATTTGTTAGGTCCAGATTGGGATATGTATTTAATGACGTTTTTTGCATTGTTAATAGGATTTATAATATTATTACGCAGAATAAGATAA

Transcript

Bpl_scaf_38288-7.5

CACAAACAAAACAACAAATATGGACGACAAAATAAACTTCGATAACTAAACGTGGCAAAATCATCGAAGTTTCATTAATTGCAATGTCATATAGGCGTTGATTTAATTATTTTCTGTTACATTTATATTTTTGTTGAGATTAGTAGACAACATGAAAATATCTGACTTGCATCATTACATTGGAACATGTACATGTAGACAACACACATTTAGATGGACTGTTCTTATTTTCCTCTTTGTCTTTCTGTTGTGTATATCAACTATACATGCTAACAATCCAAATTCTGACAAGAAATCTGATGCTAGTGATAAAGAAACAAGTAACCCAAATATTCAAGAGGATACTAAGATACAGCAACCCATTCCTAGTCATATACATGGGACTGAAAATGAAATAAAAGAGACAAATGTAGAAAATAAACAGGATGATAATTTAACTGAAAATATAAAGCAACCTGGTCCTAAAGAACAAATTGGTGATGCTCATAAAAATGATAAAGAGGAAGTTGATCCTCATGCACAACAACTTCCCTCTTCAGAGAAAGGAGAGGGCTTTCAGTCTGGTGCTATTGGATCTAATATTCAGTCAGATAAGGAAGGAGGATCACAGGAGGATAAGAAACAGACAGAAACAAGTCAAAATATTTTGACCGATAATAAACAACTAGATCCCAGTCAAAGTAAATTACCAAGTGATAACAAGAAATTAGAGGAAGTTGAAACCAAGAAAAATTTTGATGCCACAAAGAGTGAAGAAGAATTACATAAATGGTTAGATGAACGTGTTGTAAATGTGGAGACTGAAAAAGAAGAGGTTAAATTGAAATCCACTGTAACTAAATCAGAGGAACCTATTGTTCAGGAAGAAGAGAGCTATGACTCAAAAGCAGAAAAACAAAAAGAAGAAAGTACAGAGGAAAAGGAGCTGACACCAGAAGAACTTAAAGCTGAAGAATATTACAGTCAAGGAGAATCTTTTATCAATGAAACATTCCTGAAAGATTACCATCAGGCTCACCGATTCTTCAAGCTGGCTGCTGATTTGAACCATACAAAAGCTTTAGAATACATAGCATTTGCCTATCTGTTTGGAGATTATCTTCCTCAAGACATCGAAAAAGCAAAGGAGATATTTATAGATCTGTCCAATAGAGGGTCACCAAGGGGACAATTGGGTATGGGATTTCTTAGTAGTGCAGGGATTGCTTTCAATTCTAGTCAAGCTAAGGGTTTGATATACTACACGTTTTCTGCACTAGGTGGTGATCCCTTGGCACAAATGACATTAGGTTACAGATATTGGTCTGGTATTGGAGTAGAGACTAAATGTGAATCAGCTTTAACATACTACAAAAAAGCAGCATCAACAGTTGCTGATGCTGTGACATTTTCAAGTGGTCCTGCTATACAGAGAATTAGAATACATGAAGAAGTTGAAAACCATAACTCGGGTCAAAGTTCACTCATGGATGATGATTTACTGCAGTACTATCATTTTCTAGCTGATAAAGGAGATGTTCAGGCTCAGGTTGTTCTAGGTCAACTTTATTACCAAGGAGGCAGAGGAGTTCCAGTTGAACATGAGAGAGCAAATCATTATTTCCTTATGGCTGCAGAATCTGGTAATGCTAATGCTCTGGCATATCTTGGAAAGATGTATACAGAAGGCAGTCCTGTAGTTCAACAAAATAATCAAACAGCACTGGTATATTTTAAAAATGCTGCCGATAAGGGCAATTCTATAGGTCAGACTGGACTAGGAATGATGTACATGTATGGGAAAGGTGTAACAAAGGATTATAATAAAGCCTACAAGTACTTCCAATTAGCAGCAGATCAAGGATGGGTGGATGGACAATTACAGCTAGGAATTATGTACTTCAGTGGAAAAGGAGTTAGACGTGATTATAAGATGGCAGTGAAATATTTTAACTTAGCAGCTCAAGGAGGCCATGTATTAGCTTATTATAACCTAGCACAGATGCATGCAACAGGAACTGGTGTACTGAGGAACTGTCATACAGCTGTTGAGTTTTTCAAAAATGTAGCAGAGCGTGGACGTTGGGCTGCCATGTTACAAGAAGCACACAGTCTTTATAAAGAAGGAAATACACACCAATCACTGATGAAGTATACATTTTTAGCAGACCTTGGATATGAAGTAGCACAGTCAAATGTAGCGTATATTTTGGATAATGGTGAAGTAGGTTTATTTGTGGAAGATGAAATATATCAGAGAGCTTTACTACACTGGGGCAGAGCTGCATCACAAGGATCTACGATAGCCAGACTGAAGATGGGGGATTATCATTACTATGGTTATGGTACCAAAGTAGACTATGAATCTGCTGCTGGTCAGTACAGACTGGCATCAGAACAACAACATAACGCTCAGGCTATGTTTAACCTGGGATACATGCATGAACAAGGACTAGGTCTAAAACAGGATTTACATTTAGCCAAGAGGTTTTATGATATGGCTGCAGAAACCAGTATAGATGCTAAAGTCCCTGTGATGCTAGCTTTATTTAAATTAGGATTATTTTATGGTGCTGATGTTTTCAATAAAGAAATTGAAGAGATGAATAATTTTTTCCAGAAATTAGATCCAAGATATTTGTTAGGTCCAGATTGGGATATGTATTTAATGACGTTTTTTGCATTGTTAATAGGATTTATAATATTATTACGCAGAATAAGATAACATCTATGCTTGATGCGTGAGTGTGTGTGTATGTGTATTTTGAGAGATTTTTTTTTATGAAAGTCTGATTGTTCAGTTGATGTGCATGACTGATGATGAAAGGTAAAATGTATGCTTGAATTGAATGTTAAAAATGCTTGTTTATTTAAAAAAAAATCGTTAATGAATGATATTTTTTTTTTATTCCTTTGTAATATTATGTTAATCATTATCCATCTTTTAGAATAATTTATTGTCGAGGACATTTCATCAACAATAGTGCCGATAATTAGATTATTTGTTGACTGTTATATATTTCAAGAATAAAATAAAGTTGAATAAATTATGTGCGAATTAATTAATATTCATTGTTTTACATGTATATTGATTTAAATAATACATTTCTTCTGAACAGCCAGGCCCGTCGTGGTAGTAATCGTATGATAGTTGGATTTACAACTATCTGTGCAATCAGTGCCTACAACCACTGAAGTTGGGAGTTTGAACCCCGTTCATTGTGAGGTGTACTCGATGCAACATTCATTATATGATAAAGTTTGTCAGTGACTTGTCGCAGGTCAGTGGTTTTCGTCCGTTTCCTCCACCAATGAAACTGACCATCACGACATACAGTAAACCACCATCTAAACAGTCACTTAAATGGTACCACCTTGCCCATAATTGACCTAGAATAAATTTATTGTTCATAAGCCCAAAGATCTACTTTATCTTCATGTATTCTCTCAACTTAAATTTTTATTGAAATCCATGTAAAGGAAGCCAGAACTGTCAGGGTACCAGTAGTTTCTCTGATTTTTCTTTAGAAAATACTATTCCTTCAATTATTATACCAGAAACATAACAAAAACAATCATTTGTCTGCCTTTTTCCAAGATTTTGTTTGTTATGTCTGTCTGTAAACATGTGAAACTTAGTTCAAATACAGAACTCTAAAGGATTTACATGTTCTTTGTATCCAGACTAAAAGTAGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08238	Sel1	Sel1 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006597	Repeat	Sel1-like repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR050767	Family	Sel1/AlgK	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11102	SEL-1-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0036503	Biological Process	ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14026	SEL1, SEL1L; SEL1 protein	-	Protein processing in endoplasmic reticulum	ko04141	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38288-7.5 global RNA-seq network