Gene detail

Detailed information of Bpl_scaf_38266-3.33 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38266-3.33	60S RIBOSOMAL PROTEIN L3-RELATED	Bpl_scaf_38266	316105	329142	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38266-3.33

CCGCAATTAAGTCTTTCTCTTTTACACGCCGGATTTGAGATGTCTCACAGAAAATTCTCGGCCCCAAGACACGGTTCTAAAGGCTTTTTGCCAAAGAAGAGAGCTAAGCGCCACCGTGGTAAAGTGAAGGCATTTCCAAAGGATGACAAGAACAAGCCAGTTCATCTAACAGCCTTTATTGGTTACAAAGCTGGAATGTCCCATATTGTGAGAGAAGTTGATAGACCTGGATCAAAATCTCACAAAAAGGAGATCGTGGAAGCTGTGACCATTCTCGAGACTCCACCTATGTTTGTCGTCGGTGTGGTTGGCTACATTGAAACTCCAAAGGGTATGCGTGCCTTCAAGACCATCTTTGCTGAACATTTGAGTGAAGAATGCAAAAGACGTTTCTACAAGAACTGGTACAAATCCAAGAAGAAGGCATTTTCAAAATCTTCCAAGAAATGGCAGGACGAAGCTGGAAAGAAGGAGATTGAACGTGACTTTTCCAAGATGAAGAAGTACTGCAAAGTAATCAGAGTAATTGCTCATACTCAGACCAAGCTCCTGAAGAAACGCCAGAAAAAGGCTCACATCATGGAGATTCAAATTAACGGTGGAACAATTTCAGATAAGGTTGACTGGGCAAGAGAGCACATGGAAAAGAGTGTTGCTGTCAAAGATGTATTTGGTCAAAATGAAAACATTGACATCATTGGAGTAACCAAGGGTAGAGGTGTTAAAGGTGTAACTTCAAGATGGCACTGCAAGAAATTGCCAAGGAAGACACACAAAGGTCTACGTAAAGTAGCCTGTATTGGAGCTTGGCATCCAAGTCGTGTCCAGTACACTGTCGCCAGAGCTGGACAGAAAGGTTACCATCATAGGACTGAAATCAACAAGAAGATATATCGTATTGGAGATGGATACCACACCAAGGATGGCAAACTGATAACAAGCAATGGTTCTACTGAATATGATGCTGATGAGAAACCCATCACTCCCATGGGAGGTTTCCCTCATTATGGTGAACTTGCAAATGACTTTGTTATGTTGAAAGGATGTTGTGTAGGACCTAAAAAGAGGGTGCTCACTCTGAGAAAGTCATTGTTGGCATCATTTAGAAAGAAGGCTATGGAGAAGATTGATTTGAAGTTCATAGATACTGCCAGCAAGTTCGGACATGGACGTTTCCAGACCTTCAAGGAAAAACACAACTTCATGGGTCCATTGAAGAAGAATGCACAAGCCAAAACAGAAGCCTAGTTCTCTTCCAAATAGGACTCTTCAATGTCGATTAAAAAAAAAAACTGTGATGTCTGTTTTCTGTTAAATTTCACATTGGTCAAAAAAAGAAAAAAAGTTTGAATAGTGAAGGTCAACAATTCTATCAATATCAATAAAGGAACAACTACCTCTCACCTCAAATCATTGAACATATGAATTTCGTAATCAAAGTCCTTGATTTGGGACAGGCACAAAAATGTGGTGAGGTTAATCTGGATAATGGTTTTCCAATCCTCACCCTCTTAATAGGATCTCCATCACCAATACAGATACAAACTATCAAAAGAAACCTGCAGATTCATCTGCACTCTTAACAGATGATACAAAATAAATCACACCATAAACATTACAATATCATGAGTCGGTGTATGCTCATAGAGTACTGACAAGATGGCCACCACTTCAGTTTTTAACAAAGGAAATGTAAATGCAAGCTTTTCTTGATGGCACCCAAGCTACAAATGGATGATGATGCCTTTAAAAGTTCATTTATATGCAGATCAGAAATGGCATTATGAAAATTAAGCCCATCATCCCGTGTTCTATAACTGCATTTACTTTTTAAATACCAGCCAAACAAATGCAGTTGCTTTGTGTCGGTCATTTGTCAAGACAGTAGTTTCCATGCAATAACTTTTGTTGTTGAACCAATCCTGAAATTTTAGCAATTGTCTGCATTGAATATTAATGTGCCCATTTCTGAAACGGGTGCCTAAAAGGGTATTTTCTGTTTTTAACTCCTTAAAGGGTTGTGGGTTATAGTCAGTCAAATTGGCATTGAAATTGCTTTATTGCAACACTAGGTTTTGTTAATGCAAATTGGAATATGGACTTGCTTGACAATATACATAAATATAATTTTTAGGTGAAATATGAGTCTTTAGAGAAAATCACAAAGGAAATGCAAGGTTTTATTAAATAAAGGAATATTTAAATAATTCATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00297	Ribosomal_L3	Ribosomal protein L3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000597	Family	Large ribosomal subunit protein uL3	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR019926	Conserved_site	Large ribosomal subunit protein uL3, conserved site	Interproscan
IPR044892	Homologous_superfamily	Ribosomal protein L3, domain 3, archaeal-type superfamily	Interproscan
IPR045077	Family	Large ribosomal subunit protein uL3, archaeal/eukaryotic-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11363	60S RIBOSOMAL PROTEIN L3-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02925	RP-L3e, RPL3; large subunit ribosomal protein L3e	-	Ribosome	ko03010	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38266-3.33 global RNA-seq network