Gene detail

Detailed information of Bpl_scaf_38089-8.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38089-8.7	ENDONUCLEASE-RELATED	Bpl_scaf_38089	864569	880653	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_38089-8.7

ATGGAGGCAGATGAATACAACAAGATATTTTCTTATCTGAATGATGGAACCTATATTAAAGGTATGGATGAAAACGACAAAAGAAGAATCCGAAAAAGAACAGAAATATTTGAAATTAAGGAAGGGAAACTTTATTACAATGGAGGAAAGTCCAGCAAGGAGAAGAAGTTAGTAATAACAGTAGACCAAAAACCATCAATACTTAAACTCTGTCATGTGGAAAATGGATGTCACTTAGGTATGGAAAAGACATTTTACAAGTTAGCTGAACGATACTACTGGAAAGGTATGTCCAACGAACTAAAGACTTACATCAAATCATGTCACCAATGCCAACATACAAACAAAAAAGTAAAAACAACTCCAGCAGAACTGCAACCAATACAAAAAAGTACATGGAAGAAAATAGGAATAGATTTAATTGGACCATATACTGATAAGCATGGAAAGCCTTTATCCACAAATGGTTACCATTATGTTTTGACTGTTATTGACTTCTTTTCGAATTATGTGGAAGTATTTCCTTTACAAAGAAAGGAAGCTGCTGAAGTAAGTGATAAGATGTACGAGTTGTTCTGTAGGCATGGAGTACCTTTGGAGGTGGTCAGTGATAACGGAGGAGAATTTAACGCGCACCTTACAGAATCTCTGAGAGTCCAGTATGGTTATAAGCACATCCTTATAACTCCACACCACCCACAATCAAATGGTCATTGTGAACGATACAACCAGACTTTGAAAGTAATGTTAAACAAAACGGTAGAAGACAATGAAAGCAATTGGGAAAGATTTGTTTCAAAGTGTGCTTTTGCATATAATACCTCCAAACAAGCCAGCACCAAGTTCTCACCATTTTATTTGATGTATTGGCGTAATCCAATAATACCCAATGAAAATCAATTTGGCAATACTGCAACTACTTTTGAAGGCTACAAAGAACTAACAAGTGAGGACATAGACAAATTTGCAGATGGTACTAAAAGCAATGACATTGAACATCCAGACTATGTTCCTTCTATTAACATGGGATACTCAAGCGAATCTGATCAACGCATAGATGAGATGAATTCTAGTAATGTACAACCCAATAATAAAGGAATTCATAAGCGTAAAAGGAAAATGGAAAAAGAGACATCATCTGAAAGTACATGTATGCCTCTGATGCTGATGGTGTCAAGTCATGTAACAAACACCAATGGCATAATGGTACCTATCAAATCTGAAATTTTAGAACAGTCTGAATCAGAAGTTCTTCCTTCATGTTCAAATCCAAACTTTCAAATGTTTGTTTGTAGTAGACCTACTGTAGAAACTTCAGGTTCTAATGTCAACAATATGTGCATAGAAAACCAAAATTTAGGAACTGTTACACATGAGAACAATTCTGGACTTATTTATAACATAAAACAGGAACCTGTGGATGATTATTCTCTAACAAATCTATACAACGAATCTCAAGACTTCACTCAAAACTCTGTCGTAAATAGTGATAGTCAAACCAATTCATTTTCTCCTATTATATATGATAATGTGAACTCAAATGACCATAAAAGAAGAATGAAAGAAGTGGCTTCATCCTCAGTACTTAATAAAACATATGTAAATCAAGAGAAACAATCAAGTACACCTACGATGGTGTTTAGAAATGCAAAACACATACAAAAGACTACTATTTCAGACAGTATGGGAGGTAACTCTAGTCATAACATTGGAGACAACTCTAGTCATAACACAGGAGGCAACTCCACCACTAATTTATTTTCCAACCAAATAAATAGACTTGAAGATCTTGGTGTTGATGTGGCAGCATGGGTTCTTATACCTAACAATGATAAATCTAGTCTGATACATCAAATGGGAAGTCAAAAAGGGAGAGAATTCGTCAAGAGTAAACCAGATATTAATACTGAATTACATCTGTTTCTGCAAAATTCCAAGAAAAAAGAAAATGGTCAGAAAAATAACAGTAAAGAAGTCTCTAAAAAGAAACTTGAAGAAGACTCATGTTCTATGGAAAACATGGAAACTTCCTCCTGTGATGGAGAACTACCTGAAAGTATTTCTGAAAATAAGGACATTCCGTGTAGTAGTTTAAATAATTGTAATCCTACAAATGTTTTGTTTTCTGTCAAAGGATTAGAGGATAATAGTAGTTGCATAGTAGTTCGACAGGAAGAAGACTCGTCAAAGGAAGAATTACAAGTGAACACACCTCATAGGGCCAGTCCTAGACAGAACGTGAAACAAAATTTTACGTCCAGTTCTAACAAGAAGGAGAAAATACAATTGAAGAGAAAAATCAGCTCAGTAGATACAGATCCGTTATCAGGTTAA

Transcript

Bpl_scaf_38089-8.7

GTACGGTATTATTGTGATAACAATCATGGAGGCAGATGAATACAACAAGATATTTTCTTATCTGAATGATGGAACCTATATTAAAGGTATGGATGAAAACGACAAAAGAAGAATCCGAAAAAGAACAGAAATATTTGAAATTAAGGAAGGGAAACTTTATTACAATGGAGGAAAGTCCAGCAAGGAGAAGAAGTTAGTAATAACAGTAGACCAAAAACCATCAATACTTAAACTCTGTCATGTGGAAAATGGATGTCACTTAGGTATGGAAAAGACATTTTACAAGTTAGCTGAACGATACTACTGGAAAGGTATGTCCAACGAACTAAAGACTTACATCAAATCATGTCACCAATGCCAACATACAAACAAAAAAGTAAAAACAACTCCAGCAGAACTGCAACCAATACAAAAAAGTACATGGAAGAAAATAGGAATAGATTTAATTGGACCATATACTGATAAGCATGGAAAGCCTTTATCCACAAATGGTTACCATTATGTTTTGACTGTTATTGACTTCTTTTCGAATTATGTGGAAGTATTTCCTTTACAAAGAAAGGAAGCTGCTGAAGTAAGTGATAAGATGTACGAGTTGTTCTGTAGGCATGGAGTACCTTTGGAGGTGGTCAGTGATAACGGAGGAGAATTTAACGCGCACCTTACAGAATCTCTGAGAGTCCAGTATGGTTATAAGCACATCCTTATAACTCCACACCACCCACAATCAAATGGTCATTGTGAACGATACAACCAGACTTTGAAAGTAATGTTAAACAAAACGGTAGAAGACAATGAAAGCAATTGGGAAAGATTTGTTTCAAAGTGTGCTTTTGCATATAATACCTCCAAACAAGCCAGCACCAAGTTCTCACCATTTTATTTGATGTATTGGCGTAATCCAATAATACCCAATGAAAATCAATTTGGCAATACTGCAACTACTTTTGAAGGCTACAAAGAACTAACAAGTGAGGACATAGACAAATTTGCAGATGGTACTAAAAGCAATGACATTGAACATCCAGACTATGTTCCTTCTATTAACATGGGATACTCAAGCGAATCTGATCAACGCATAGATGAGATGAATTCTAGTAATGTACAACCCAATAATAAAGGAATTCATAAGCGTAAAAGGAAAATGGAAAAAGAGACATCATCTGAAAGTACATGTATGCCTCTGATGCTGATGGTGTCAAGTCATGTAACAAACACCAATGGCATAATGGTACCTATCAAATCTGAAATTTTAGAACAGTCTGAATCAGAAGTTCTTCCTTCATGTTCAAATCCAAACTTTCAAATGTTTGTTTGTAGTAGACCTACTGTAGAAACTTCAGGTTCTAATGTCAACAATATGTGCATAGAAAACCAAAATTTAGGAACTGTTACACATGAGAACAATTCTGGACTTATTTATAACATAAAACAGGAACCTGTGGATGATTATTCTCTAACAAATCTATACAACGAATCTCAAGACTTCACTCAAAACTCTGTCGTAAATAGTGATAGTCAAACCAATTCATTTTCTCCTATTATATATGATAATGTGAACTCAAATGACCATAAAAGAAGAATGAAAGAAGTGGCTTCATCCTCAGTACTTAATAAAACATATGTAAATCAAGAGAAACAATCAAGTACACCTACGATGGTGTTTAGAAATGCAAAACACATACAAAAGACTACTATTTCAGACAGTATGGGAGGTAACTCTAGTCATAACATTGGAGACAACTCTAGTCATAACACAGGAGGCAACTCCACCACTAATTTATTTTCCAACCAAATAAATAGACTTGAAGATCTTGGTGTTGATGTGGCAGCATGGGTTCTTATACCTAACAATGATAAATCTAGTCTGATACATCAAATGGGAAGTCAAAAAGGGAGAGAATTCGTCAAGAGTAAACCAGATATTAATACTGAATTACATCTGTTTCTGCAAAATTCCAAGAAAAAAGAAAATGGTCAGAAAAATAACAGTAAAGAAGTCTCTAAAAAGAAACTTGAAGAAGACTCATGTTCTATGGAAAACATGGAAACTTCCTCCTGTGATGGAGAACTACCTGAAAGTATTTCTGAAAATAAGGACATTCCGTGTAGTAGTTTAAATAATTGTAATCCTACAAATGTTTTGTTTTCTGTCAAAGGATTAGAGGATAATAGTAGTTGCATAGTAGTTCGACAGGAAGAAGACTCGTCAAAGGAAGAATTACAAGTGAACACACCTCATAGGGCCAGTCCTAGACAGAACGTGAAACAAAATTTTACGTCCAGTTCTAACAAGAAGGAGAAAATACAATTGAAGAGAAAAATCAGCTCAGTAGATACAGATCCGTTATCAGGTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_38089-8.7 global RNA-seq network