Gene detail

Detailed information of Bpl_scaf_38069-1.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38069-1.2	ATP-DEPENDENT RNA HELICASE	Bpl_scaf_38069	179640	189099	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38069-1.2

GTTATAAATTCACTGCCATGCAATCACGACCATGACAGCCCCTTGAAGCCATATGTTTTCTGTTACAGGTAATATTAGCCACCAACATTGCAGAGACATCACTGACCATTGATGGTATTAAATATGTGATAGACCCAGGATTCTGTAAACAGAATAGTTACAATGCTAGGACAGGCATGGAATCCTTAGTGGTGACACCTATATCTAAGGCATCAGCCAATCAACGAGCCGGTAGAGCAGGACGAGTGTCTGCAGGAAAATGTTTTAGACTATATACAGCTTGGGCTTATAAAAATGAACTGGAAGATAATACTATACCTGAAATACAGAGAACAAACTTAGGCAATGTCGTTTTATTGTTAAAAAGTTTAGGAATAAACGATTTAATTCATTTTGACTTCATGGACCCTCCTCCTCACGAAACTCTAGTTTTGGCATTGGAACAGCTGTATGCTTTGGGAGCATTGAACCATAGAGGAGAACTGACTAAACTTGGGCGGAGAATGGCAGAATTTCCTGTTGATCCCATGATGTCAAAGATGATCCTTGCATCTGAACAGGTATAAGTGCTCTAAGGAAATCTTGTCGATAACAGCTATGTTATCTGTAAACAATTCAGTATTTTATCGTCCGAAAGATAAAGTCGTTCACGCCGATACTGCGAGACAAAACTTTTTCCGACCAGGTGGCGATCACCTGACGCTGCTTAACGTTTATGAACAGTGGGAAGAAACGGACTATTCTACGCAGTGGTGCTATGAAAATTTCATTCAGCATCGATCGATGAAAAGGGCTAGGGACGTAAGAGATCAGCTGGAAGGATTACTAGAGCGTGTAGAAATAGAGGTTATGTCTAATCCTGGTGACACCATAGGGATAAGAAAGGCCATTACTGCTGGATTTTTCTACCATACTGCTCGTTTATCAAAGGGAGGTAATTATAAAACAGTAAAACACCAACAGACAGTTATGGTACATCCAAACAGCAGTTTATTTGAAGATCGACCTAGATGGCTTATCTACCATGAGCTTGTATTTACTACCAAAGAATTTATGAGACAGATAATAGAAATAGAAAACAGTTGGTTAATGGAGGTAGCACCTCACTATTACAAGGCAAAAGAACTAGAGGATGGATCAGGAAAGAAGATGCCTAAAAATACAGGGAAGGCTAGAGAGGATGTAACCAGGAAATATTAAAACACACCTTGGACATAACTCATCCTGGAGGTTGACATTCCTAAGGAATTTCCTTGGTACCAGTTTTACATAGTGTGTATGCCTTGGTACCATTCTTGCACTACGTGTATTCCTTGGTACCTGTTGAAGATTGTGTTTATATACTGGTATGAGTTAAACATTGTGGGTGTCAGTTGTGAAGAAGGGAGGACACTCTGGTTTAGAAAAAAACACACACACCAAGACAGCATCAATTGTCATCAGACTGGGCTGAAGATTCTATCATAATGTATAGGAGATTCAATTGACATAGTAGAGAAAATTCAGGACTATGATAGTGATATTGTAAGATAGACAACCACTTAATGTTATATCAGAGAAAATATGACAAATTTTGTAAGAATATGTTTACAAACTATGAAGTGAAAACAATTTTACAATTTTAAATAATCATATTAATGATGAAGATATCAACTCATGATAAAAGTTTTGTTTTTTCCTTTCATGACCGTCTGCTTCAGGTCATATTGGTTGATTTGATTTGTTGTGTTTAATGCCACTTTCAGCAATATTTCAGCTATATCATGGCGACCAGTTTTAGTGGTGGAAGAAGCCGGGCTACCCGGAGAGAACCACCAACCATGGGCCAGCAACTGGTAAACTTTATCACTTGCCGCTGCGAGTCGAGTGCGCCCTTTTTTGTAATTTACAAAGCCAGGCATTCCGTATTGGTGATAGGCTTGTATGAGTTGTTAGGTAATCCAACTACCTAACTCTTGGAACCACCCGGGCCCCACGGTCATCATTGGAGTAAATGGGCATTGTAAATTACATTTGAAGCATACATATTAAAGAGCTGTTTTTGTAAACAATATGCAATTAACGGGAAACTTCTGCGAAAGTAATATTGGTTGGTTATATTTACATGATTACTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_38069-1.2 global RNA-seq network