Gene detail

Detailed information of Bpl_scaf_34764-3.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34764-3.12	HEPARAN SULFATE SULFOTRANSFERASE	Bpl_scaf_34764	412911	439142	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_34764-3.12

ATGATGTTGAAGAGATTTTGGGAGAGATTGAAAACCAATTATTTACGAGGATCTCCCTTTCATCGTGTTGGACGGACAAAGACCTTTATATCAGCAGTTATATTTTGCAGCTTTATCTCATTTATATTTTTCTCGTACCATATCTTAGGACAGGGTCCAGTTAGAAGAAAGGCCAACCCTCCTGAGCCCTCTATTACATGTAGGTTAAACAACCTTCAAAAATCTTTATTTACACCAAAGGATCACAACACCAAAGATAAAAATCTAATAAGTAGAAGAGTGTTAGTTTTTGTTGAATCTCAGTATACAAAGACGGCTAAACACATAACCAGTTCACTGGAATATGCACGGATCGAGTATAAAATTGAAAACACTGGTCACAATTTACCAAATTTAACTCACTTTGATAAAGGAAGATTTGCTGTTATTATTTTTGAGAGTCTAGAAGCCTATGTTAACATGGACAATTGGAATAGACAGATTCTAGATAAATACTGCCAGAGTTACAAAGTTGGTATGATTATTTTTGTACACTCAGCTGATGAGTACGGGATTGAGAAAGAAAAGGTTCCAGGTTTACCACTGATATTACGTTATAATGTTGCAGTTAAAGATTATCGTTTGAACGTCTTTACTGACATTTGGCGTATAACCAAACCAGGAGAAGTAGTTTCAGACACAATTGAGGAAGATGACTGGGTTGTATTTGAATATAATCATTCAACTTATGAACCGTTATCTTATGCAAAACTGGCTCCCCCACCGTATTTAAATTCTCGTTACATACCCGACAATTCTACAGTTGCATGTGTTGTACTTGACCGTGGAACATTAGACGGCATACAGCGAATATTTTTTGGAAATGATTTGGGATTCTGGGTTCATCAGATGATATTTTTAGATGGTTTGTCATATCTGTCACATGGAAAGCTGAGTTTGCCATTAGAACGTTTTATACAGGTGGATGTTGATGATATATTTGTAGGAGCTTCTGGTACCAGAATGACAGTCTCTGATGTGGAGGCGACAGTGAAATCTCAAGAAAGACTACAAAGTCAAGTCAGCAACTTCCATTTTAACTTGGGTTTTTCTGGCTGGTTTTTCCAACATGGAAGTCCATTAGAGAATCTGGGGGATATCAAAATTATAGAACAAAGACATAAATTTTGGTGGTTTGGTCATATGTGGAGACATGAACAAGCACATAAGTTTGAACAAGAGAAATTAGAGATTTCTATGATAAAAAACTATCAATTTGCTAAAGAACACAAGTTACCAGTGATTCATCAGTATGTCGTTGCTCCACATCATTCTGGTGTTTATCCTGTACACGAGCCTCTGTATCAAGCATGGAAGAATGTCTGGGATATAAGAGTGACTAGTACAGAGGAATATCCTCGACTATATCCTTCATGGAAGAGGCGGGGCTTCATCCATAAAGGGGTCATGGTGCTACCTCGTCAAACATGTGGTCTTTTTACACACACTTTATTTATAGACAGCTACCCTAATGGTAGGAAGAAACTAGATGAAAGTATACAAGGGGGAGATCTCTTCAAAACATTCCTATATAATCCTATTAATATATACATGACACATATGGGTAATTATGCAAATGACAGACTGGCTCTCTACACATTTGAAAGTGTAATTAAATTTGTAAAATGCTGGACAAACTTACAGCTGAAACAGATTACTCCATTAGAATTGGGCATTAAGTATTTTGAGATGTTCCCTGAAGACAAAGAACCTATATGGCAGAATCCATGTTTGTATAAAAGACATACACAGATCTGGTCTGCCAACAAAAGCTGTGATAGACTACCAAAGTTTCTTGTTGTTGGACCTCAGAAAACAGGTACAACAGCATTGTATACATTCCTTCAGCTACATCCTGCCATTGTCAGTAATTATAACAGCCCTGATACATTTGAAGAAGTACAATTTTTTAACGGCAATAATTATCACAAAGGCATTGATTGGTATATGGAGTTTTTCCCTGCACCAACAAATTTCACTTCAGATTTTATGTTTGAGAAGAGTGCCAATTACTTTGAGAATGAAAAGGTGCCAATGAGAGTACATTCTTTACTGCCTAAAGCCAAAATTATTTGTATACTTATTGATCCAGCTAAAAGAGCATACTCATGGTATCAGCATGTAAAATCTCATGGGGATCCTACTGCAGGAAATTATACATTTCATGAAATTATAACAGCTCCAGATACTGCACCTCGTAGAGTTAGAGAATTACGCAATCGTTCCCTGATACCTGGGATATATGATCAGCATTTACAGAGATGGTTAGAATACTTTCCGTCTCGTCAGATATTCATTATTGACGGAGCTCGTTTAAAAAGTAATCCAATAGCTGTGATGCATAATGTCCAAAGATTTCTTCATATAGAACCTCATTTTAACTATAGTAATCATTTAAGGTACGATTCAAAGAAAGGATTTTACTGTCAAGTAATGTCAGACAATAAAAATCAGTGTTTAGGACGAGGTAAAGGACGTCGTTATCCTTCTATGAACGAAACAACGATAGCCTTCCTACAACAGTTTTATAGAAAACATAATGTAGCATTATCTAAACTTCTAAATAAACATAAATATAGAATACCTGACTGGCTAGAAAAAGAATTAAGTAGCTAA

Transcript

Bpl_scaf_34764-3.12

CGCATGTCTGGAGATCCAACCTGAATCAATTTGAGAAATGTAAACACATCGGAAAACATGCTTTGGCAAGATGTATTAGAAGAACTTTGAAGATTTAAAAGAACCTAAGCTAAAAAATAACATCATTGTTTCACTCGGGATGAGTTATTTTGAAACCACGACACAGATATGGAAGGATTCATAACTCCATTATTTTTTAAAACAGTTTTTTGTTGTTTTTGGTTTTATATTATTCCACTTGAAATAACATAGAAATTCAAAAGAAAACGGAATCAAAATGATGTTGAAGAGATTTTGGGAGAGATTGAAAACCAATTATTTACGAGGATCTCCCTTTCATCGTGTTGGACGGACAAAGACCTTTATATCAGCAGTTATATTTTGCAGCTTTATCTCATTTATATTTTTCTCGTACCATATCTTAGGACAGGGTCCAGTTAGAAGAAAGGCCAACCCTCCTGAGCCCTCTATTACATGTAGGTTAAACAACCTTCAAAAATCTTTATTTACACCAAAGGATCACAACACCAAAGATAAAAATCTAATAAGTAGAAGAGTGTTAGTTTTTGTTGAATCTCAGTATACAAAGACGGCTAAACACATAACCAGTTCACTGGAATATGCACGGATCGAGTATAAAATTGAAAACACTGGTCACAATTTACCAAATTTAACTCACTTTGATAAAGGAAGATTTGCTGTTATTATTTTTGAGAGTCTAGAAGCCTATGTTAACATGGACAATTGGAATAGACAGATTCTAGATAAATACTGCCAGAGTTACAAAGTTGGTATGATTATTTTTGTACACTCAGCTGATGAGTACGGGATTGAGAAAGAAAAGGTTCCAGGTTTACCACTGATATTACGTTATAATGTTGCAGTTAAAGATTATCGTTTGAACGTCTTTACTGACATTTGGCGTATAACCAAACCAGGAGAAGTAGTTTCAGACACAATTGAGGAAGATGACTGGGTTGTATTTGAATATAATCATTCAACTTATGAACCGTTATCTTATGCAAAACTGGCTCCCCCACCGTATTTAAATTCTCGTTACATACCCGACAATTCTACAGTTGCATGTGTTGTACTTGACCGTGGAACATTAGACGGCATACAGCGAATATTTTTTGGAAATGATTTGGGATTCTGGGTTCATCAGATGATATTTTTAGATGGTTTGTCATATCTGTCACATGGAAAGCTGAGTTTGCCATTAGAACGTTTTATACAGGTGGATGTTGATGATATATTTGTAGGAGCTTCTGGTACCAGAATGACAGTCTCTGATGTGGAGGCGACAGTGAAATCTCAAGAAAGACTACAAAGTCAAGTCAGCAACTTCCATTTTAACTTGGGTTTTTCTGGCTGGTTTTTCCAACATGGAAGTCCATTAGAGAATCTGGGGGATATCAAAATTATAGAACAAAGACATAAATTTTGGTGGTTTGGTCATATGTGGAGACATGAACAAGCACATAAGTTTGAACAAGAGAAATTAGAGATTTCTATGATAAAAAACTATCAATTTGCTAAAGAACACAAGTTACCAGTGATTCATCAGTATGTCGTTGCTCCACATCATTCTGGTGTTTATCCTGTACACGAGCCTCTGTATCAAGCATGGAAGAATGTCTGGGATATAAGAGTGACTAGTACAGAGGAATATCCTCGACTATATCCTTCATGGAAGAGGCGGGGCTTCATCCATAAAGGGGTCATGGTGCTACCTCGTCAAACATGTGGTCTTTTTACACACACTTTATTTATAGACAGCTACCCTAATGGTAGGAAGAAACTAGATGAAAGTATACAAGGGGGAGATCTCTTCAAAACATTCCTATATAATCCTATTAATATATACATGACACATATGGGTAATTATGCAAATGACAGACTGGCTCTCTACACATTTGAAAGTGTAATTAAATTTGTAAAATGCTGGACAAACTTACAGCTGAAACAGATTACTCCATTAGAATTGGGCATTAAGTATTTTGAGATGTTCCCTGAAGACAAAGAACCTATATGGCAGAATCCATGTTTGTATAAAAGACATACACAGATCTGGTCTGCCAACAAAAGCTGTGATAGACTACCAAAGTTTCTTGTTGTTGGACCTCAGAAAACAGGTACAACAGCATTGTATACATTCCTTCAGCTACATCCTGCCATTGTCAGTAATTATAACAGCCCTGATACATTTGAAGAAGTACAATTTTTTAACGGCAATAATTATCACAAAGGCATTGATTGGTATATGGAGTTTTTCCCTGCACCAACAAATTTCACTTCAGATTTTATGTTTGAGAAGAGTGCCAATTACTTTGAGAATGAAAAGGTGCCAATGAGAGTACATTCTTTACTGCCTAAAGCCAAAATTATTTGTATACTTATTGATCCAGCTAAAAGAGCATACTCATGGTATCAGCATGTAAAATCTCATGGGGATCCTACTGCAGGAAATTATACATTTCATGAAATTATAACAGCTCCAGATACTGCACCTCGTAGAGTTAGAGAATTACGCAATCGTTCCCTGATACCTGGGATATATGATCAGCATTTACAGAGATGGTTAGAATACTTTCCGTCTCGTCAGATATTCATTATTGACGGAGCTCGTTTAAAAAGTAATCCAATAGCTGTGATGCATAATGTCCAAAGATTTCTTCATATAGAACCTCATTTTAACTATAGTAATCATTTAAGGTACGATTCAAAGAAAGGATTTTACTGTCAAGTAATGTCAGACAATAAAAATCAGTGTTTAGGACGAGGTAAAGGACGTCGTTATCCTTCTATGAACGAAACAACGATAGCCTTCCTACAACAGTTTTATAGAAAACATAATGTAGCATTATCTAAACTTCTAAATAAACATAAATATAGAATACCTGACTGGCTAGAAAAAGAATTAAGTAGCTAAAACATTTTTATATATGTACCGGTAAATAAAATCTTGACATTTTTAAACAGATGGAGACATATAGATGCTTTCACAATAACTGTGGTCCTGCATTCATCCGGAACATTTGTGAGTGGTAATAATACTCTTTCCTGTAAAATGATGTCAAGAACAATTAAATGCATTTATGATGGCACGATTTTTCCATGAAATCGTCATTTTTACAATCACAAATGTCCCGGGTGAATGTAGGATCGCAGTTATCGTGAAAGGGTCAATTATTGTTGTTGTGGAGGGTAGTCATGTGTGTTTTTATGCCATTACTCAAATTTTAATATAGGATTCATGAAATTTTAATACAATTGTTGTTGTTTGTGTCGAAGACGGCTTAAACAAGATATTAGGACAAGGGAACAACGAGTTCTTTTTTCCCCCCACAATAAACAAACGTTACTTCTGTATTTACTTGTAATGTTTATCATGTACAGTCTAACCTGTATTAAGAAGTCACCTTTGTGACAAGGAAAAAGTGGTCTTATAAGACAGGTGACCTCTTAAATGAGGTTTAATTCATATGAAATTTTCTATAACAGGTCAAGAAAAAAGTGACCTTTCAATACAAGTGACTGCTTAATAGAGGTGACTGCATGGGGAGGTTTAGCTGTATGTGATTGGTATAATTTCTACAGTCATATCATGCTTTAAAATCAAGGGGCTCTTTTATTCTATTTTGGTGCTTTTTTTTAATGGCCCTGTTTATTTTTTCGTTTTTTTTTTTAGAAAGATAAATTATTTTTATACCATTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00685	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan
PF12062	HSNSD	heparan sulfate-N-deacetylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000863	Domain	Sulfotransferase domain	Interproscan
IPR021930	Domain	Heparan sulphate-N-deacetylase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037359	Family	Heparan sulfate sulfotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10605	HEPARAN SULFATE SULFOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0008146	Molecular Function	sulfotransferase activity	Interproscan
GO:0015014	Biological Process	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Interproscan
GO:0015016	Molecular Function	[heparan sulfate]-glucosamine N-sulfotransferase activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0019213	Molecular Function	deacetylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02577	NDST2; heparan sulfate N-deacetylase/N-sulfotransferase NDST2	EC:3.1.1.- EC:2.8.2.-	Glycosaminoglycan biosynthesis - heparan sulfate / heparin	ko00534	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34764-3.12 global RNA-seq network