Gene detail

Detailed information of Bpl_scaf_34414-6.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34414-6.10	BONUS, ISOFORM C-RELATED	Bpl_scaf_34414	718299	720566	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_34414-6.10

ATGGCTTCTCCAACACCATCTCAAAGTGACACTGTCACGACAGCATCTACCACATCAAATTCGTCTGACAGCGAGATGGAAACTGCCGGACTAAACACAAGATGTTCCATTTGTCACGAAACTTACACAATACCAAAAGTCTTAACATGTTTCCATACATTTTGTCAACCTTGTTTAGAGAAAACACAGGAAGTGGCTGATAAGATCACATGTCCTGAATGTCATCAGGATACATATCTTGGAGGTCAGGGGTTAACAGGACTTTTACCCGATTATGCTGTTAGTAATCTGTTAGAAACAAATGCGTTAGATACTAGTGCCTTACACTGCACAGGATGTAAAAGTAAAGATACGAATGCTGTCGCAAGATGTTTTGATTGTGCTAACTTTCTTTGTGCCAACTGCGTCATGGCCCATCAATTTATGCATTGTTTTGAAGGTCACCGTGTCGCCAGTTTGAGCGAACTCCAAGGTAACAAGGAGGATAAGACGGAGAAATCTATTTACTGTCCTCGACACAAAACTGACGTTCTTAAATTTTTCTGTAAAACATGTCAACAACCAATCTGCAAGGAGTGTACCGTATTTGATCATGGCAGAGGTCACGATTGTCAATTTATTATGGATATCGGAGAAAAACAAATTGAAATGATGCAGCACATTGATAACGACGCAAAAATGAAAGCCAACGAATTACGAGGGTCAGCAAAAGGAATTGAGCACCTGTCAAGTCGGCTTCAGGTTCAATATCACAAGGCACAAAATGATATCAATGATACTTACAACTTCTATAGAGCTATGCTGGAGGAAAGAAAGCAGGAATCGTTGAAAGAGTTAGACCAAGCTTACAACACGAAACAAGTTGCCATAAGTGGACTGAATCAGAAAATTCAAGAAAACATTGATAGGTTGTATCTGGGTTGTGAGTTCTTAGAGAAAATCTTGAAGTATGCCAGCGTAACCGAAGCACTGCTATTCAAAAATCTTGTCGAGCAACGATTTCACAACATGTTCAACTTTTGTCCAGATATAAACAATCAATCGTACATTGATATCGAGTTTGTATCAAATTTTCAAGCTATAACTGCAGGTGTTAGAAACACATTTGGATATATTCGTGAAGGTAACGACGAAATGACTGGTCAAATTCAGAAACCACAGCCAATTGCAAGACCAAATGGACTCGTTTCAACATCTCCTCCACTCACTAATGGTCATAACATCTTTGAAGCTCCACCTCTGACGAAAGAATTTGGATCACAAAATAGTCTGGTGTTTCCAGCGAATGATACCAACATGTATGAGAAATGGTCAAATGGTTTGGACATTTTCCAAAACGGAATTGATGTCTTCTCAACAAGTGCCGATCCCTTGTTTGATTTAACAACCAAACTAAATTTGAGTGGGCTGTATCCTCCGAAATCTCAAATAAAGCGACAGAAAATGATTTATCACTGTAAGTTTGGTGAATTTGGGGTCATGGAAGGTCAATTTACAGAACCAAGCGGGGTCGCAGTTAATGCACAGAATGACATTATCGTAGCAGACACAAATAACCACAGGATTCAAATCTTTGACAAAGAAGGCAGATTTAAGTTTCAATTTGGGGAATGTGGAAAGCGTGATGGGCAACTACTGTATCCGAATCGTGTTTCCGTGGTAAAGTCTTCAGGAGATATCATAGTCACAGAACGAAGTCCAACACACCAGATTCAGATCTACAATCAATACGGACAATTTGTACGTAAATTTGGAGCAAATATTTTGCAGCATCCACGAGGTGTCACTGTTGACAACAAAGGGAGAGTAATCATTGTTGAATGTAAAGTCATGAGAGTCATCATTTTCGATCAATTCGGAAACGTCATTCATAAGTTTGGATGTTCCAAACATTTGGAATTTCCAAATGGCGTGGTTGTAAACGACAAAGAGGAAATCTTCATCAGCGACAATAGAGCTCACTGTGTAAAAGTATTCAACTATCAAGGCGCCTATCTGCGACAAGTCGGAGGAGAGGGTATCACCAATTACCCAATAGGAGTTGGCATCAATAGTGCGGGAGAGATCCTTGTAGCAGACAACCATAACAATTTTAACTTAACCATATTTACACAGGATGGGCAGTTAATCAATGCTTTAGAAAGTAAAGTCAAGCATGCTCAGTGTTTTGATGTTTCGTTAATGGATGATGGTTCTGTGGTACTTGCAAGCAAAGACTATCGTCTGTATATCTACAGATATGCCCAGATCCCGGGATTGGGTATTTGA

Transcript

Bpl_scaf_34414-6.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11997	TRIM2_3; tripartite motif-containing protein 2/3	-	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34414-6.10 global RNA-seq network