Gene detail

Detailed information of Bpl_scaf_34315-1.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34315-1.13	TRANSIENT RECEPTOR POTENTIAL CHANNEL 4-ASSOCIATED PROTEIN TCPC4AP	Bpl_scaf_34315	81320	113320	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_34315-1.13

ACATTATTGGGAAATTTGATGAACTTTGAGCCAAGGCGAACAAATGAAGATGCTTCTTCTGATGATGAACAGCACAGATATGCAAAACAGTTTTATGAGCATGGTGGAATTGAGGTTTTGATGAGAATTTTGCTGTTCAACACTCATTTTCCACAACAATGTAAAAAAGTGAAAGTTGGTTATCCAGAATCTGACCTCCTGTTGAGAATCAAGAGTTTAGTTCTAGAAATTTTAACCAAAATATCTACCACTAGTATTGGAGATGAAGTGATCAACATGTTGATGGAAGATGATGATGTTTTAAATTATGTATTTACTCTCTTGTCACATACAAAGACATTTATAAATTCATGTCAGCTGATAGAGGATATGTTACAGTCTAAACGCCAAGTCTTAGATTTACACAGAATAACAAATATTAAGACACTAATTTTATCACTAACAGACACACAGTTGGCAAATTTCTGTAGGATACTGGCTGTAGCAATATCAGACCTTGATATTTATGAAAATAAATCTTCATTGTTTGCACAGAATAAACAGAAAAGGAGTAGAGGATTTGTTAATGTTAGAGATATCAACCAAGAATTGTTACTAGGAATACCAGAGTTACTGCCAAGACTGGTTAATCTAGCGGTAATGAAGGATTACACTCCTAGATATAGAGGAATGGTGAGTGAATTAGACTGTTGGATGGAATGGATAGAGAATCAAATGGCAGAGGAGGTGTATGACACACCTACAGTTGATGATCTGGACGAATTCATTGGAGGAATTTCAGAACCAACATCTGCTGGTGGTGCTATGAATGTTCAACAGGGTCTGAAAATTACAGAGGAACTAGTCCAGAGGGTTGAAGTTGTCTATGTATTAGGTCTTTTCTTACTTGGAAAACACCGGAAAAAGGTTCAAAGAAAATTGGCAGAATTGAAATTGGCACCAGGGCTAAGTGAATTATTTGACCAGTTTATCTGGAAGTGTCAAGTGAGTAGGTACAGCAGTAGAAATAGATTACGTGGTCATAATGCTGCCTGTGAATGTAGTCCAGAGGTGGCTTTAAAAATTCAGTTTTTACGACTTGTACATAGTTTTTGTGACCATTCTGATTATAAACATTTGTTGTTATCTAAGAATGAACTGAATGAAGTTAAAAGAATAAACACTAAAGCTGGTAACCTGTCACTGCCCAACTTAGATGCTGTAAATAAACAATTAATGTGTAAAGGAAGTAAAGGTCTGTTAACAAAAATTGTAGAAGTGATGAAGAAGGAGCCTACGACATCAACTTTCAGATTCTGGCTGGCCAGAGCTGTAGAGAGTTATTTAAGGGGTAATACTTCATACTGTGATCAAGTCTTTCTAATGAGAAGAGGTTTACTACAACATGTGGCAACCAACATAGTGGAACATGAAATCCGACATAAAGAAATTCTACAAAGTAGTTTTGATCTGTTGGGAGAACTTGTCAAATTTAATATAGAGGCATTTAGATCATTTGATGAAATTCTCGATACTGCTCCTAAGTTTGATAAATTTACCAGTACAGTCAACAGAAACTTAGTAGATTCCAATATGTTTATACGTAGCTTGGAAAATGTTAGCTGTTTAAATACAACTTTGGTATTTTTGATGTTTGCCAACAGAAAAAATCAGTTGCCAAGATATCTACAGGCTCTCAGAGACGAGAAAGAGGACGTTATGGATGTCAGTGGATGTTCTAATTTGTTACGCAACTTCAGGGATTTGTTAATATTTTGGCAAGATCATTATCTACACAAAGACAAAGATTGTAGTGCATTGGAAAAGAGTTCCAGGATTAGCTTTGACTATTGGAAACAAACAGTTTCAATTCTAGTTGATGAAAACAAAGACATGACAAGTGGAATATTACATTATATCACCCCCATTCCTTGTGATAGACCTAACTGAGCCAGAAAGAGGCTGAAGGATTTTTTCTAGCTTTCTACTTTCACATTGAATGTTGAGATCATATGATAGTGATCAGGTGGATGTCATGTGATTGGATCACATAATGCGATGCAATTCATTGATTTTGAGTTGAAGACTGCCCCTCTGAGAGGAGGAAACTGAAGACAGGACTTCAGAGAAAAGCTGCCAAATTTTCATGACATTTTATTATTTGTTTTATTTGTTGAAAACTTACGTAAATGAATGGATTTGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12463	DUF3689	Protein of unknown function (DUF3689)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022162	Family	Short transient receptor potential channel 4-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31743	TRANSIENT RECEPTOR POTENTIAL CHANNEL 4-ASSOCIATED PROTEIN TCPC4AP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0019902	Molecular Function	phosphatase binding	Interproscan
GO:0031464	Cellular Component	Cul4A-RING E3 ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11796	TRPC4AP; Trpc4-associated protein	-	Protein phosphatases and associated proteins	ko01009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34315-1.13 global RNA-seq network