Gene detail

Detailed information of Bpl_scaf_3367-5.26 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_3367-5.26	DDB1- AND CUL4-ASSOCIATED FACTOR 15	Bpl_scaf_3367	559210	582809	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_3367-5.26

ATGGAAATCAAGGCTAGTCAAATCAGCGGCAAATATAAAGGTCACACTATTAGGGACAGTGCTCAGCAAAGGTCAGAGTCTACTTCAGCTTGTTCTCAGTTTATCAGTATTGTAATTGATATTCTTAGGTCAAGGTTTACAGAGGAGGGGGATACATCTGTATTAGGTTCCCTTACCAAGTTGTTTGACCCTTCTCTGTATTCCCAGTCAGAATCTGACAATTCTATCCTTTCTGAGGTTTCAAGTGTTGTTAGCTCTTACTTGTCTTCGTGTGGTTTAGATGACATTTCTGTTGTTAGTCAGGAGTTGGTAGGTTTTATTTCTTATGCTTCAGTTCAGGTGTCAGGGTCTCCTGAGCTATTTTCCTCAGTTAAAGACTTAGTCCAACTTGCTGTCAGGTCATCTACTACCTATCTAGCTGTTTCAGTGGCTGCTGAGTGCTTGTTAGTGTCACCTGTCAGCACAGTAGACTGTGAGAGAGAGTTCTCCAGGATGAACCTCATCAAGACAGATGTTAGGAACAAGTTAGCGATCAACACCCTGGAGAACCTCATGAGAGTCAGTCTGCATGACAGTGACGAGACAATGTTCCAGTTCAACAAGGCCTTTGATAAGTGGGCTGCAGTAAAGTCCCGCATGATTCTTATAGCAGTGGCTGTTACTGATCATGAGCAGTCCAAACCCCACATGAAAGAAATTGTTGTTTTAAGTGCTAATGGGAAATCAACGACTGGAAAAATGGTATCTGAGGATGGAAAGACATTGAAACTACTAAAATCTTCAGAGGTTCACAGATTGGCTTACCTTTTCAGAAATGCACATGCTATTGCAAAACAAAATAGACCATTGACTGACAATAAATGGCTGTGCCAAGTTGACAAATCCAAAGGGCTTGACATTGCGCCAAAAGAAATACAGATGATATCAAAGTGCCTTGCTCATAAGTTTGCCTTTCATACAAAATTTGAGCTGACTCCACCTTTTCCACCTTTTTGTCCAAGGACTCAATTAAAAATTGATGGAATTGCTGTGGTTAACACAGGTGATTCAATAGTTGCTATGGCTGTATGTGTGGGAGACTCATGTAAGCATTCACCGATGTGTCGTATGGATTGCACAGTAGTGGAAAATATGGACGATCCAAGTCACACAGAGGGAGCAATATCAGATACTATAAAATACACAGTCAGAAGCCCTGCTTCTCCCTCACATCTCTGTAGTGAATGTAGAAAAAGACCATTCTGTAAACATGAATATGTACTCTCTCCATCTCCTAAAAATCTTTCAGATGAAAGTCAGAAAGAAAATATGGAGACTTTCCTTTTAAAGGAATATAGTAAACAGAAATCTCCCAAGTCTCCACGTATCAGCGACTCTAATCAACGAAAAAATGGAAAACACGGGTCATCAGGGATTTGTTCTCAGGAGTGGTTTGAAAGTATGGACGATGAAAATCAATCAAATGGTGTTTTATCTGCACATTCATCTTCGGTCATTCATGAGATTCACGAATCTGGCTCACACATCCACAATGTGGAACTTGAGATGGATCGAAGCTCAAAAGACAGATGTTTAAAATCTCCCAAAGATGAAAATTCATGTGATTCTAAAAGTAGTGTTCAGAGCAGTATTCACTTGCCATCCAAGTCTAGTCCTTTACATATATCAGAAAACATTGAGTGTTCAGACAATCAGCCGGCTCAGAGCCCTCTTCGTAGCAACATGCAGAATAGTCAGTCACGTCAAACGTCTCAACGTTCGTTTTTCTCACCTTCTAATAGTACAAGTAGTAGGAGTACCACAGACAGTCTTGTGTTACAAGTCAACGAATCAAGAACAGTTACATTCTCTGTTAGGAAGTATACACAGTCTCTGGAACAGGACGAGGAATCACAAGAGACTGTTGAGGATGATTTAGATCTGGCCTATCGTAGTGTACTTCCTGTTGATGTATGTGGCCCAGACGGCAAATCACTTTTACTCTCACAAAAGAAAGATGTCAATCAGAGACATTTAAAGGTTGTGCAGTTGACCTTTGATGTTGAGCATTATTTAGAAGAGGTCATAGGTCAGAAGGCAGAATGGGGTCATCGTTACATATCATTTACAAACTATGACCTACAAATTCTTGATGTTTGTGCAGACAGAAACCTGGTTGTTGGGAAAGTAATTGTTTTATTACATGCCAGAGAAGAAATAGAATTACCTAAAAAGTCAAAAAGATGGAAAAATTCAATTAAGATGTATCAGACAAGTTTTTGTTTTACATGGAATTTGACCAACGGTTTATATGAGACAGTTAATATTGATAGATTAACAGAAGTCAACGAGACTGAAATACGGAGGATAGAATGGAAGCCTGGACATAGAGAATGTGCCTTGTTAAGACGTCATATGTAA

Transcript

Bpl_scaf_3367-5.26

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14939	DCAF15_WD40	DDB1-and CUL4-substrate receptor 15, WD repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR032734	Domain	DDB1- and CUL4-associated factor 15, WD40 repeat-containing domain	Interproscan
IPR038914	Family	DDB1- and CUL4-associated factor 15	Interproscan
IPR047319	Domain	DDB1- and CUL4-associated factor 15, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28541	DDB1- AND CUL4-ASSOCIATED FACTOR 15	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0080008	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11791	DCAF15; DDB1- and CUL4-associated factor 15	-	Ubiquitin system	ko04121	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_3367-5.26 global RNA-seq network