Gene detail

Detailed information of Bpl_scaf_32713-2.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_32713-2.4	UV EXCISION REPAIR PROTEIN RAD23	Bpl_scaf_32713	188949	193217	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_32713-2.4

ATGGATGCCTATTACATGAGAGGTCCAATCATCCAAACAGATGGAGTTTTACCCATCCACAGAGAGCGACCTGGCCACGATGGACAGCTGCAACGACAACATCTACTGAGAATGCAAGAAAAAATGTCAGATTCTGAAGATGGAGAGTCAGATTACGATGATTTGGAAATTAATGAAACTAGTGCCATTTTGGACTTAAATCCAGCGTATGGGCAAACTATCGCCCTTTGGTCATTCAGGAAGCATGATAGCATCGCTATATTCCCGCCAAGTAACGATTTAATCAGCAGAGTAGTTGAATATGCTGAACAACATCTTGGTTTTTTGCGATATGAACATAAACTTATGTTGCTAAGCCCTGGACAGCTGTCACCCGTTGATTTGAAAAGTGTGTACAGCATACGGCCAGGTGCTGTTGTCATGGTGATGCCTGAACCGAATGTCCATTTGACAGTTGAAATTAGCCAATTAAAAACAAGCTTCACATTAACTGTGGATCTCACAATGACAGTGCACAAAATTAAAACGTTTGTACGAAAGAGAAAGGGGATACCGGTTGAAAGACAGGAGATTCTTTATTCTAACAAGGCATTGGAAAATGACAAACGACTGCTGGAATACAGAGTAAAAAGTAGATCGACACTTTACATCATGATTCAAGCTCACTTTGATTTATTGATAAACGTCGAGACATTCTGGGGAAAGACGTATAGATTTTACCTCGATCCTTGTAGCACTGGCACAGATATAGTTTATGCAGTATTTAACAGGGCTTTTAGCTCGAATGGTCCGGAGGATGTTGGATTACATGAACTCTATGTACCGATTCATATTCTAGTGTTGCAATATCAGAATAAATTCGTAAATTGGGATTATTGCATTGCATACCTAGGAATTCATACGGGGGAGAAATTAATGTTAACGACAGTAGGACATCAAAGTAATATGAAACTCGAAACCGTGAATGTTGTCACAGAAAGTGGTGACAAATATGAAGTAACTGTCTCCCGATACGATCGTTGGTCAGTGCTTGCTTTTATGCTGCATGGGTTGACTAATGTCCCTGTTGATCTAATACGATTGTATAAAAATGGAAAACGTGTAGATTTCTCCTCCATAATTGGACAAATTGGAAAATCTCATGTAGTTGTAATGAATGTGGTAATGACGCACATGGACAGTGATCTCGTTTTTGGAGTTCCACTTAAACTTAGCATAGGTAACGGAATAATTGAAAACGTAAGAATATCAGCAAATAAGACAGTGCGTCATTTAAAAAGAAAACTTGAGAAAATGGGAGTACCCAATGCTACTTTATACGAGTTGACAATCGGTAATCAGAAATTACCAAACAATAGTAAAATTATGGATCTAGTTTCTGATCTAAAAATCCCACTGGTTCTAAAATTAGAAACATATCCAGTCTTTGCCCATGCTCCAGATGGGGTCATATACAAAACTTATTTAAAAGCCAATCAAACATTGGGAGACTTTAAACATAAAATAGAACTCAAAACTGGATACTCTTTAAAATCTAGTCGACTTTTAATAGCAGGACAAGAACTCGTAGCACACCCTCATAGTGTTCTTTATGACGCAGGTATCAGTTGCCGAAATTCAATTTTCTTTAAGTACACACATGATATGGAAGGTTTTTTTGTCGTGGGAAATAACTGGCTTGAAAAAATTAGACTTCCACTAAAACCATCATCCACGGATATCAGAAATGCAGTCTGGAATGCAAGAAAATTGTCTGAGGGGAGTCTGAACTGTGTTCTTACCATACTATACTGGTTCTTCATGCCTAGACTTGATGGTCTAACTAAAGTTCGCACAAAAATAAAAATAAGACAAAGAATGCCTGTAGCAAGGGAAAAGCTCTATGAACTCAAGAATAATGTTAAGCTTCAATATTTAGAAAGAGATTTACTAGAAAAACACAAATCAAGAGCCTCATATTCTTTTCCATATCCTGGCGAAAATAAATCATGGCCTCGTTCAAGCTCCAAAGTTCGGCATCATATAAAAACGGATAATATTCTAAAGTTTGAACCCGACCAATACATCGATCCGAAAGAAATAATTCAGACTACCGGACGTGAAAACCGTCATCGTAGAGCTGTAGATTCAGAAATGATGGAGGCACCACGATCCACCATTCCGTCATGGATGAGAAATTTACAAACAAGAAATAAAACAAATCGTCTGCTCATGGCTGATGTAGAAGGGGGTCCTGATGGAATGGCAAGTGTACATCAGTCACGAACTCAGCAATTTCGAAAAATAAACGATGCAAGGATGACCCACATTCCAAACAATCTAGATCATGCTCGCTTAGCGTACAGGGCTGCCCATCAACATGATAATTTTAAGACTAAACTCCATCACACTATATTGCTACAAACTGCTACTAAATTTGACAATTCTATGAACATACCTCAATAG

Transcript

Bpl_scaf_32713-2.4

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0031593	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0070628	Molecular Function	proteasome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08770	UBC; ubiquitin C	-	PPAR signaling pathway	ko03320	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_32713-2.4 global RNA-seq network