Gene detail

Detailed information of Bpl_scaf_31275-1.0 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_31275-1.0	COLLAGEN ALPHA	Bpl_scaf_31275	81774	108956	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_31275-1.0

ATGGGACTGATAGTGTACAGTTCCAATATTGGAGACCATATAAGTCTCTCAACTTTCAAACCAAAAACTATGCTTGAAATCCTTGCAACGTCTCTTCGGCATCCTAAGCAGTCAACGAACACTGCAAAGGGTATTGAATATGCCAGGACTCAATTTAAACAACACGGAAGGCGAGGAGTGCCGAAAATTCTTATAGTGATTACAGACGGAAGTTCTGATTCTCCGAGAGATACGAAATCCCAGGCGGAAATGGCAAAAATTGAAGGAATCCGAGTTTTAGCACTTGGGGTCGGAGGTCAAGTTTTTAAAGATGAGTTGCGTCAAATTGCTTCAAGTCCAAGAAAAGTCTACACGGCAACATCCTATATAACACTACAAGGTCTGGTGTCTGAAATCAGGAACATGAATTGGACTCATCCTGTCAGAAGTATGAATGAGAGTCATTTAGATATATCATCCATTCTCTGTGATCGAATCTGTGATGTACCAGGAGACATTGTGTTCCTCATTGACGGCTCAGATAGTATAGGTGACGTTGACTTTCGTAGGCAGAAAAATTTCGTAGCAAATATGATAGACAATTTTGAGATAGGAAAAGAATCCATCCATGTTGGTATTGTCGTATTTAGTACAATAATAGGAGATACTGTAGGTCTACAGCCATCTAGATCCAAAGATTTGTTGAAAATTTTGGCTAACAGCTTACGACATCCGAAAGTCGGAACAAATACGGCTTTGGGTATAGAGCGCGTGCGCAAAATGATGCGAGAACAGGGACGATCTTTCGCGCCAAAAATTATGGTCGTCATCACAGATGGAAGATCTGCTTCTCCCGCCCTAACAGCCCTCCAAGCTGACTTAGCCAAGGCCGAAGGGTTAACAGTGATTGCCGTTGGCGTAGGAACCATTACAACTACGACATCGACAACAACGACAACTGCTGGACCATTCACAGTGCCGCTACCATCTGGTTTGATATGTGATGTGCCTGCTGATATTGGGTTCCTACTAGACGGGTCAGATAGCATATCGCCACAGGATTGGCCAAAGGGGCGTAACTTTGTTGCAAATTTGATAAATAATTTAGACATTACACCGCAAGCAATACATGTTGGTATTGTTGTATACAGCACCATTATTGGCGGGAAAGTTCCGCTGACACCTTTCAAACCAAAACCTTTGCTAATTGCGCTGACAAAGAACTTAAAACAACCTAAACTTGGTACAAACACCGCCATTGCTATTGATACCATGCGACAAATGTTCCGTCAGCAGGGTAGACCCAATGCCCCAAAAGTTATGATAATAGTAACGGACGGGAAATCAACAAACCCACAGCAAACGAAAATACAAGCAGCGAGGGCAAAGGCCGAAGGAATTATTATAATTACCGTTGGTATTGGCGGTTCTGGACTATTTAAGGACGAAATTCGACAAATTGCAACAAATCAGAGGAAAGTATTTGAAGTGGTTGACTTCCAGTCTTTGACACAAATCATACAAGAGCTTAGAGATTTAATTTGTCAAGTAATCACCACAACCCCAATGCAGATCACCACTCCATCAATGCCACCACCTGTGATATATCCACCAATTCCAGGCTGCGATATTCCTGCAGAAATTATGATTTTAACTCATGGATCAGAAAATATCAACGAGTACAACTGGAACAAGAACAAAGATTTCATTGCTAACCTGATCAGAAACTTGAATGTAGGGCAAAACTCACATCATATGGGAATGATAGTATACGGAGCTAGTGTCGGTGACACCGTCGGAATAGATCCGTACAAGGATACTTTCGACCTTACAAACGTTGCTAATAGTTTAATTCATCCAGGGAAGGGCGCCAATACAGCGCAAGGATTAGTAATAACAGATCAGACTTCCACTGATATGGCTGCGACAAAGACCGAAGCAGAGTTTGCAAAGAAGAACGGTATACACTTGATGACAATAGGTGTCGGTAATAAGATAAGTCCAAGAGAACTACAGCGCCTGTCCTCAACAGAGAGGCACATTCATAGAGTAGACAACTTTGACGGGCTAGAAATGATCCTGCCTCAAATTAGACAAGAAATATGCGAAATTATAATGAGGCCAACGGGCCCGTCATTTACAGATTGTACCAAGTATGTACAGTGCTGGAGAGACAACAATAGAGTGATGGGAACCATCAAGAGTTGTCCATTTGGTCAGTTTTGGGATAGAGATGCCCTTGCCTGTCGACCAGCTCTAAGTGTTCATTGTCCGGCAGATGCTTGCCGCCATGCCCCCGATGGATTTACTTATGGAATGAAGAATCAGGGTTGTAGAGCGTATTGGCTGTGTGTTAACGGACACAGTGTTGGGTCTTGTTGTGCTGCCGGTACATACTATGTAGAAGGCATGGGTTGTATGAGAGGAATGGCATGTAAAGAACCTTGTCCACCAGATGGCGGTATCTTACTCACACCGGATTGCAGTAAAGAAGAACACTGGGATGAACGATATTATGTAGAAAAGGTTCCATATTATGGTAGAGTTGTCAGACCATGTCCACCAGGAACGGTGTTCTCGAAAAGTTACTGTGACTGTATTGTCAACATCAATGGCCTGATACCGATACTGCCTGGTGACAAATGCAGACCAAGTGCCCATTTCAACTTTGATGTTGACATGAAGGACAAGACAGGAGAATTGGTGCCCACGTCATACCTAAATGTGAGGAGAACAAGATATGGTACCGCACACTTCCCCGGGGGTAGTGACATGACTTTGTGGAAAAACAAGAACGTTGGAATAGGCAATCAGCTTGTCGTCCGGTTTAAATTTAAATTCGATCGATGGACTGACCGTTTCGACTTAGGAGGTGTAATTGTTGACATGGGTAAAGGCGGTGATACACAGTGGAAATACGATATCGAATCCGGTTGGACGAGAAACATTACAGTTGGCGGCGGTTGGGATATCCGGAATTTAGTCAAACTGTTCCGATCACTCATCAATGGCAGAACGGAAGCGGAAATGAAGCAAAATATGTGGAAAATTGCAAACTCCATGGATTTCAAGACATTACTTTATCAGTTAGGATTTGTCCCTGATACCGCTAACGGCATGCAGATATTGAGACTTATGGTAAATGGAAATGGAGCAAACATTTTGAGACAGATAGTTATCGCCCTTGAAAAACAGAAGACGCCATTTGATATGAGAATTATGTTAAAACAGTTGTTATCCCGACCAGAGATGAGAACTTGGATTCTTCAAAATACAGGAAAAGAAAATATCGATATCACGATGAAGAACTGGAACCGATTCCTTGAATCACTAGTTTTACCAGAAAATGAATGGAAAACCGGCGACTACACATGGTACACACCAGCTGATAAAATTGGAACAGGGACATTATCTTCTGTAGCCATTATCGCAGATTTATGGAGAACATTTGTTCGGATGATGGGTATGGACGGACGAGATTGGAGAGATATTCTAAGAATAACCCTTGGTACTGACGTCATAGGAGATGGCGGTCGTATTGACCTTGAATTTGTAAACGAAATGAAAAACGTCTTAGGACGAAATAACACTATTCTTAGAAACTGGCACGATTTCTTACAAGGAAAGAATGAAGAACAACTTCCGTTCGATACCTGGGGTCCAAAGTTGACTTGGACCTTTGGTGGACCAGACGCAAGTGAAGACGATTTATTTAAGGAGATAAAAGCAGTTCTTGGAGATGCTAATTTGAAAAATAAATGGATTAATTTTATTCAAGGCCACTATTCCAGTAGTGGACCAGGGACTACAGAATCTCTGCTTTGGAAACCTGGTAGGAAAGGAGAATTATTTTGGAAAATTATTTTTGGACAGGGACCTAACATCCAAACTGGTGGTGGACAAGGGTCCGTTGCTGTAAATAAACTGGTAGATTTATGGAGGACATTTATTACTAATATGAACCTAAAGGGGCCAAAATGGGACAAATTGTTAACCTGGACTAATACTCTACAGCCTGGCTCTACAAATATAGACATCAAGAAACTTCTTCATGAGATGAAAGCTGTTCTAATGTCAGACAATAATATAGACTCTGCATGGCTGAAGTTCCTTCAAGATAATGGAGTCGATACATCGTGGTTTTTACGCATGATATTTTCCGACAAAGGTGGTCCATTCGATGAAAACTGGGTTTATTGGTATTTGTATCGTAACAAAGAATATGCTCCTGGTAGCGGCGGAGGCAATTTTACTGGCGGCACCGGAACCGGAACCGCAACCAGCAAGAATATAATTATTGATTTATGGCGGAAGTTCATTGCGCAGTCTAAATTAGGTCCGGAGTGGAATGGAATGTTAGTTTGGACTCTTGGAAGTGGCGGAAATGGCGGTCCTGGCGAATACATGGAATGGATTTATGAACTTACTTCCGTACTAGGAAATTCCGAAATGAGAACAAGATGGATAAATTTCTTAAATTCAAATAACGTCGGAAATGAATGGATTAATTGGTTTTTAGTTATTTCCGGAGATTCAGGAACAACAGGCGGTGCATGGGGAGTCGATAATTCTGGACTTGGAATGATTATGAATTTATGGAAAAAATTCATATCGACACTAAATCTAAGAGGACAAAACTGGAATAAAATATTGATTTGGACCCTAGGTGGAGGAATGACGGATCGATATATAGACTGGTCAAATGAAGCATCCGAAGTCCTTAGAAATATTACCATCAGGGAGATGTGGTTTAAATTCTTAAACCAACATGATGCAGGTGGTGCTTGGGTCAATTGGTTCCGAATGATTCTCGAAGGTGGAGGCACTTCCGGTACTGATAGAAATTGGATGTGGCATTACATTAGCACTGGAATGTCCGTTCCTCTCGATGTTCTGGCCAATATATGGCTACAGTTTGTCTTTGACAGGAATCTTGGGTATGGACAATGGGCCGATAGTCTCTGGTGGACACTCAATGTTATTCCTGGAAGTATTTCCAATGAGGAATATGTACATCTATTCAACGAGATGACAATTTTGATGATGGACGAATATATCCGAAATGATTGGATAGCATTCCTACACGCACATGACATCACAGCGTCATGGGGTGGCGGAAATGCAGGTGGTGCAAGATCATCCGAATCGATGGACGCCATTTTGAATAGTCTATTTACAACTGGATCAAGTTCTAGTTCTTTCGGGTCATACGCTGGTAGTTCTGGTGGTTCAGACTTCTTCTGGCCTATGGACTGGGATATGGATGGAGGGTTCTCAAGGAAAAGAAGGTCAGCGGATAGACAGAAACGAGCAGCAGTAAACAAAATGGCACATGTCGCTCTTTTGGGAAATTGTGGCCCGAATACACAACCATCGATATTAGTTACAGCAAATGAGCAAAATGTGAAAATGGGACTTATAGCCGAAGGACAAAATGGTCCGACTGAATTAGAAATTCCTTTGATTGTCATGTACAAATGTGTACCACTAGCACTAAAGAAACAATTACCTTGA

Transcript

Bpl_scaf_31275-1.0

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR002557	Domain	Chitin binding domain	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06238	COL6A; collagen, type VI, alpha	-	PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			ECM-receptor interaction	ko04512	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709
			Protein digestion and absorption	ko04974	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_31275-1.0 global RNA-seq network