Gene detail

Detailed information of Bpl_scaf_31252-4.22 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_31252-4.22	DUF4291 DOMAIN-CONTAINING PROTEIN	Bpl_scaf_31252	431481	461087	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_31252-4.22

GTTTCACTTTCACTTCATTGTGCAATGATATTCTGATTATTTTCTTTCCCAAATATTGATATACTGTTTGCTTCAATCCTAAGCTCAATATCAGATAATGGCTTGTGTTTCTTCAGACGACGATGGTAAGGGAGAATCTCAGACAAAACTTTCTGATGTAAAATATTTACCATGTGAAACGCAGAGACAAATCCAAACCAAAACTCAAACTCAAACTCAAAGTCAGAGCAAACCGCAACTCCAAGAAGAAGAAGAAGACAAATTAAGCGACGAATCTAACATGGCACGTGCTGTAAATTATGGTAATTTTTCATTACCAAAAGGGATTGATGTAGTAAAATACATATTTCAAAAGGAACATTGGCCGAAAGAAGGAAAACACATTCTTGCACAGTATGATGATAAGACTGTGATAGTTTATCAAGCATTCAAGCCGTCTATTGCAAAATATGCAGTAGAAAATCAAAGATGTGGATGGGCTAGTAAACACAACCAAGAGAGAGTATTAGCAGTGAAATTAAGCAGATATGGATTTGAAGTTATTTTGGCAAATGCTTACACTGTATCACTACAGAAAGAGTGTAATTTACAAACAAAAGATATAGGAGTCAGACTACAGTGGGACCCTGATCATTCTCCTAATTATGCTAAATTAAACAGGAAAGCAATACAGCTAGGGTTAAAGGGAGAGATATTAAAGAAATATGGAACTGAATGGATACACAGTATTACAGATATTACTGATTTTGTAAAATCACAGAAGAAAATACTGGACAAAGAAGGACAAAAAGAATTAATGACTCCCAGGGAGAGGGTATACCAAGTCCAAAATTTCACTACAGCTAGTAGAATAAGCTTAGATGTGTTTGATGTATCTAATCAACCAGTGTTTACACAAAGGCGGGAGTTAGTAGTGTTTCAAATAGATGAGAATATAAGTGACAAATTCTTAGCAGAAACATTCAAGCAGTATGGTCCTCTAGAAGATGTCAGAATCATACCTAATAAACAGACAGGCTTTGTCAGCTTTAAGAACACAGAAGATGCTTCACAGGCTCGGGCTAGTTTAAATGGTACCTTTATAGCAGGAAAGAAAATCAAGGTGGATTATGCTTCTCAACGTAATACTGGTGGTGGTTTTAAAGATAGCGTATCTACTGGGGCTACAAATTTTCAAGATTTGCAAATCAAAACTACTGCCAGACAAGAACTAACCCCATCTAAGAAGGTATGGGTATCTGGACTGAGCCCTAAAGTTGAAATCACACATTTAAAGGAGGTCTTTTCAAATTATGGACCATTGGAAGGAGCTCACATCATGCCTGATAAAATGACAGGAACGTCCACAGGATTGGCACTGATTGAGTTTAAGACAAAAGAGGATGCAATACAGGCAAAAGAACAATTGGATGGGGGTCAGATTGATGGACAGGAGGTCAAAGTTCAATTTACAAAACCACAGAGTATTATTGCAAATGGTGCTGGCAATAATAAACCTCCCAGTTCTAAGGATTGGATGTGTCAAAATGGTGATTGTGGAAATGTCAATTTCTCCGCAAGGAAAAGATGCAGTAGATGTAACAAACCAAGATTTGACATGGTCAGTGGAAATAACGGAACAAGTTACCGAAAAAAAGAAACTTGTGGACAAGTTTTAATGGACGGATGTGAAGCAAAGATTGATGGTGCTCCTGTGGTAGGAGATGTTGGTAAAACAGAAGAAAGATGTAATGATCAAGGAGATGAATCTCGTACAGAATTCTCAGTTCCAGATGAACTGCACATTCCTTCAGGAATGCTTACACCAGAAACTGCAGGCGAACATTCTATAATAGAGAAAACGGCCAAGTTTGTTGCAGCTAATGGAATAGGGATGGAAATACAGATCAAAGAAAAACAAGGCAGTAATCCTAAATTTAGATTCTTGAACCTACATGACCCTTTGAACTTTTATTATAACCACATGGTGAAGATGATTAAAGCTGGCAAATATACACCTAGCTAAAGATTAACTAAAATATTAATCAACTACAGTACATTAAAATAAGGCACAGTGAAAGTTAATACCTCAAACATCAAAGGCAGATTATCATCAACATGAATTTTAAATGTTTCAAGTATAAATTGTAAAGGATTTTTAAACCATTTTTTTAACTTAAAGGGATATTGTCTACGATTTTTTTGAAAATTTTTAACTGTCCATAAATGATTTGTTTAAGCTATCATTAAACAGTTATGCTACAAAATATACGATTGGTGTTCTTTTTTTGACAAAAAAGACCCAAAACTATCGTTATCGGAATTATTGTTCGGATGACAGAAATTCAAAGTGAAAGTAAAAGTAAAAATGGGAGTTTGGAATTCTCAGGGGTTTAGCTTTGAGGTAAGGAAAATACTGTTAAGATTCAAACACTTCATGATTGTCACGCTTGTTTAATGTTGTTTGAATCTTAACGTTTCGTAGCGTATTCGCCAATAATTCGGTGTTTAATCATTTTATGAAGGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01805	Surp	Surp module	Family	Interproscan
PF14124	DUF4291	Domain of unknown function (DUF4291)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000061	Domain	SWAP/Surp	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR025633	Family	Protein of unknown function DUF4291	Interproscan
IPR035967	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38567	DUF4291 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_31252-4.22 global RNA-seq network