| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_30030-4.6 | RIBOSOME MATURATION PROTEIN SBDS | Bpl_scaf_30030 | 452550 | 458550 | - |
| CDS | |||||
| Bpl_scaf_30030-4.6 | |||||
| Transcript |
| Bpl_scaf_30030-4.6 |
| Protein |
| Bpl_scaf_30030-4.6 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01172 | SBDS | Shwachman-Bodian-Diamond syndrome (SBDS) protein | Family | Interproscan |
| PF09377 | SBDS_domain_II | SBDS protein, domain II | Domain | Interproscan |
| PF20268 | SBDS_C | SBDS protein, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002140 | Family | Ribosome maturation protein Sdo1/SBDS | Interproscan |
| IPR018978 | Domain | Ribosome maturation protein SDO1/SBDS, central domain | Interproscan |
| IPR019783 | Domain | Ribosome maturation protein SDO1/SBDS, N-terminal | Interproscan |
| IPR036786 | Homologous_superfamily | Ribosome maturation protein SBDS, N-terminal domain superfamily | Interproscan |
| IPR037188 | Homologous_superfamily | Ribosome maturation protein Sdo1/SBDS, central domain superfamily | Interproscan |
| IPR039100 | Family | Ribosome maturation protein Sdo1/SBDS-like | Interproscan |
| IPR046928 | Domain | Ribosome maturation protein SDO1/SBDS, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10927 | RIBOSOME MATURATION PROTEIN SBDS | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0042254 | Biological Process | ribosome biogenesis | Interproscan |
| GO:0042256 | Biological Process | cytosolic ribosome assembly | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14574 | SDO1, SBDS; ribosome maturation protein SDO1 | - | Ribosome biogenesis in eukaryotes | ko03008 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_30030-4.6 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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