Gene detail

Detailed information of Bpl_scaf_29777-3.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_29777-3.6	PRE-MRNA-PROCESSING PROTEIN PRP40	Bpl_scaf_29777	332356	366487	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_29777-3.6

ATGTCGCAACCTCCTGATTTCCCAATAGGGCCACCAAATCCTGATGCAAGACCTCCCTTTGGTATGCCACCAGGAGGGCCACCAAGATTTATGCCACCCATGGCTCCAGGTGGTCCAGATATGAGTGCACCACCAATGATGCCACCTGTTATTCCCCCTGCAGGTTTCCCAGGACCCCCAGGGGCAATACCACCAGCAGGATTTCCACCAGGATCCATGCCACCGGGAATGCCACCCATGTTTCCCCCAACAGGAGTTAATCCAGCTGTAACAGCCATTCAACAATCTGGGTCAGCATCCAACTCACCTGTATCTGGGGATGGAAAACAAGAAAAGAAAAGTGTGTGGTCAGAACACAAAGCTCCTGATGGAAGAACATATTACTATAATTCTGTAACAAAACATTCCAGCTGGGAAAAACCAGATGATCTTAAAACAAAGGCAGAGTTAATGCTGTCACAGTGTCCATGGAAGGTTTATAAGTCAGACACGGGTAAAGTGTACTACCATAACACAGAAACAAAAGAATCCAGATGGACCAAGCCTAAAGAACTGGAAGAATTAGAAGCAATGTCAAAGCCAGACAAAGATGGTTCAACAGATTCATCATCCAAGACAGGACATCTTCCTACACAGTCCTCCAAACCTTCTTCAGCAATCCAGGCAGCAATGGAGGCTACACTAGCATCAATAGAGTTACCTCCCCCTAACTCTGGTATTAAACAACCAGCAGAGAATGCTGACACAGCAGAGAGTTCAAGTGAAAGTGAAGAAGAGAAAGTCTCTAAGAAGGAACATGTTCCATTGATTTTCAAGAATAAGAAAGAGGCCATGGAAGCATTTAAAAGTCTACTCCGAGACAAGGGTGTGTCTTCAACATCGTCATGGGAACAGGCATTGAAGGTAATAGTGAATGACCCTAGATATGGTGCTCTGAAGCAACTTAACGAGAGGAAACAAGCATTCAATGAATATAAAACAAAGCGTGCCAGAGAAGAAAAGGAAGAACAGCGACTGAGAGCGAAGCAGAATAAAGAAGATTTAGAACAGTTCCTTCTCAGTTGTGATAAGATGAATTCAAATATCAAGTATTGGAAAGCAGATGACATGTTTGGACATTTAGATGTATGGGCTAATGTTCCAGATAGAGATAGAAGAGACTTATTTGATGATGTTATACACATGCTTGCCAAAAGAGAAAAGGAAGAAGCAAAAGCATTGAGGAAGAGAAATACGAAGGTATTTGCAGAAATATTGGATAGCATGCCAAATTTATCATACTGTACAACCTGGTCAGAAGCACAACAAATGTTACTAGATAACCCTAGGTTTACAGACGACCCAGACCTACACAATATGGACAAAGAGGATGCATTGATAGCATTTGAGGAACACATCAGAATGTTAGAACAGGAGTATGATGATGAAAAGGAACGGGAGAGACGGAGAACAAAGAGACAACAGAGAAAAAATAGAGAGGGATTTCTGGTTTTACTAGATGAATTACATGAGCAAGGTAAACTGAATTCTATGTCTTTGTGGATGGATCTCTACCCGATCATAAGTCAAGATGTCAGATTTACCAATATGTTAGGACAACCAGGTTCTACACCATTAGATTTGTTCAAGTTTTATGTTGAAGATTTGAAAGCTAGATTCCATGATGAGAAGAAAGTTGTTAAGGAAATATTACGGGACAAAGGGTTTTCTGTTGATCTTGGTACATCATTTGAAGACCTGGCCTATGTTATATCTGAAGACAAAAGAGCCATAGGTCTAGACTCAGGGAATATTAAGTTAACATTCAACAGTCTGATAGAAAAAGCTGAAGCAAGAGAGAAAGAACGGTTGAAAGATGAAGCTAGAAAATTAAGAAAAATTGAAAGTTCATTCCGAAGTCTGCTGAAGTCAGGTCCTGTAGAGATTGACGAGACGTCCAAATGGGACGAGGTTAGAGAAAGATTAGAAAGAGACCCAGCCTACCAAGCTATTACATTGGAGTCAGAAAGGATACGATTGTTTAAAGAATACCAACAGATCGTGGAAGAATCTTGTAGTCATCATCATGCCAAAAAGAAGAAGTCCAAGAAACACAAAAATAAGCATTCACGGTCAAAATCTAAATCAGCGAGTGAATCTGAAGAAGAAACATCAGTATCAACAAAACACAGAAAGAAGAAGAAAGACAGAAAACAGAGGTCAGAATCAAGGTCAAGGTCACCTAGTTATGCTTCAGAATCAGATCATGATAGAGAGGACAGTCGAAAAAAGCATAAGAAAAAGTCTAAAAAGAAGAAGCATATATCACGATCCCCATCAAGATCCAGTTTAAGTGGTGGTGAAGATCAATCTAGAAGAAATAGGAAAAAAGAGAGGAGTGAACAGGAAACCAGAAAAGACAAGTCCAATGACTGGGATTCATCAGGGAGTGATCTGAGTGAGGGAGAATTAGAGAAGAAAAGACGTTTGTTACTACAGCAATTAGAGGCAGATGCTTGA

Transcript

Bpl_scaf_29777-3.6

GCTTTCGTCACTTCCTATGTTTGCAAGATGTCGCAACCTCCTGATTTCCCAATAGGGCCACCAAATCCTGATGCAAGACCTCCCTTTGGTATGCCACCAGGAGGGCCACCAAGATTTATGCCACCCATGGCTCCAGGTGGTCCAGATATGAGTGCACCACCAATGATGCCACCTGTTATTCCCCCTGCAGGTTTCCCAGGACCCCCAGGGGCAATACCACCAGCAGGATTTCCACCAGGATCCATGCCACCGGGAATGCCACCCATGTTTCCCCCAACAGGAGTTAATCCAGCTGTAACAGCCATTCAACAATCTGGGTCAGCATCCAACTCACCTGTATCTGGGGATGGAAAACAAGAAAAGAAAAGTGTGTGGTCAGAACACAAAGCTCCTGATGGAAGAACATATTACTATAATTCTGTAACAAAACATTCCAGCTGGGAAAAACCAGATGATCTTAAAACAAAGGCAGAGTTAATGCTGTCACAGTGTCCATGGAAGGTTTATAAGTCAGACACGGGTAAAGTGTACTACCATAACACAGAAACAAAAGAATCCAGATGGACCAAGCCTAAAGAACTGGAAGAATTAGAAGCAATGTCAAAGCCAGACAAAGATGGTTCAACAGATTCATCATCCAAGACAGGACATCTTCCTACACAGTCCTCCAAACCTTCTTCAGCAATCCAGGCAGCAATGGAGGCTACACTAGCATCAATAGAGTTACCTCCCCCTAACTCTGGTATTAAACAACCAGCAGAGAATGCTGACACAGCAGAGAGTTCAAGTGAAAGTGAAGAAGAGAAAGTCTCTAAGAAGGAACATGTTCCATTGATTTTCAAGAATAAGAAAGAGGCCATGGAAGCATTTAAAAGTCTACTCCGAGACAAGGGTGTGTCTTCAACATCGTCATGGGAACAGGCATTGAAGGTAATAGTGAATGACCCTAGATATGGTGCTCTGAAGCAACTTAACGAGAGGAAACAAGCATTCAATGAATATAAAACAAAGCGTGCCAGAGAAGAAAAGGAAGAACAGCGACTGAGAGCGAAGCAGAATAAAGAAGATTTAGAACAGTTCCTTCTCAGTTGTGATAAGATGAATTCAAATATCAAGTATTGGAAAGCAGATGACATGTTTGGACATTTAGATGTATGGGCTAATGTTCCAGATAGAGATAGAAGAGACTTATTTGATGATGTTATACACATGCTTGCCAAAAGAGAAAAGGAAGAAGCAAAAGCATTGAGGAAGAGAAATACGAAGGTATTTGCAGAAATATTGGATAGCATGCCAAATTTATCATACTGTACAACCTGGTCAGAAGCACAACAAATGTTACTAGATAACCCTAGGTTTACAGACGACCCAGACCTACACAATATGGACAAAGAGGATGCATTGATAGCATTTGAGGAACACATCAGAATGTTAGAACAGGAGTATGATGATGAAAAGGAACGGGAGAGACGGAGAACAAAGAGACAACAGAGAAAAAATAGAGAGGGATTTCTGGTTTTACTAGATGAATTACATGAGCAAGGTAAACTGAATTCTATGTCTTTGTGGATGGATCTCTACCCGATCATAAGTCAAGATGTCAGATTTACCAATATGTTAGGACAACCAGGTTCTACACCATTAGATTTGTTCAAGTTTTATGTTGAAGATTTGAAAGCTAGATTCCATGATGAGAAGAAAGTTGTTAAGGAAATATTACGGGACAAAGGGTTTTCTGTTGATCTTGGTACATCATTTGAAGACCTGGCCTATGTTATATCTGAAGACAAAAGAGCCATAGGTCTAGACTCAGGGAATATTAAGTTAACATTCAACAGTCTGATAGAAAAAGCTGAAGCAAGAGAGAAAGAACGGTTGAAAGATGAAGCTAGAAAATTAAGAAAAATTGAAAGTTCATTCCGAAGTCTGCTGAAGTCAGGTCCTGTAGAGATTGACGAGACGTCCAAATGGGACGAGGTTAGAGAAAGATTAGAAAGAGACCCAGCCTACCAAGCTATTACATTGGAGTCAGAAAGGATACGATTGTTTAAAGAATACCAACAGATCGTGGAAGAATCTTGTAGTCATCATCATGCCAAAAAGAAGAAGTCCAAGAAACACAAAAATAAGCATTCACGGTCAAAATCTAAATCAGCGAGTGAATCTGAAGAAGAAACATCAGTATCAACAAAACACAGAAAGAAGAAGAAAGACAGAAAACAGAGGTCAGAATCAAGGTCAAGGTCACCTAGTTATGCTTCAGAATCAGATCATGATAGAGAGGACAGTCGAAAAAAGCATAAGAAAAAGTCTAAAAAGAAGAAGCATATATCACGATCCCCATCAAGATCCAGTTTAAGTGGTGGTGAAGATCAATCTAGAAGAAATAGGAAAAAAGAGAGGAGTGAACAGGAAACCAGAAAAGACAAGTCCAATGACTGGGATTCATCAGGGAGTGATCTGAGTGAGGGAGAATTAGAGAAGAAAAGACGTTTGTTACTACAGCAATTAGAGGCAGATGCTTGACAATTTAATACATTGCCTCGTCTGTGAATTAATTGATTGTGTTCAAAAATTTGTAAATATGAAGACATACATCATGTTCTATCTTATCACACAATTGTCATCATAAAGAATTGTCATTGTCATAAATGTGTCATTATCAATTATTATAGGGGCTGTCATGGTCTTGATCGTATGGTAGTTGGATTTATAACTACCTTTGCAATCAGTGCTTATCAGCACTTATGTTGTGAGTTTGAGCCCTATTCATGGCGAGGTGTACTCGATACAATATTATGTGATAATATTTGTCAGTGACATGCGACAGGTTGTTGGTTTTCTCCTGGTACACCGGTTTCCTCCACCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397	WW	WW domain	Domain	Interproscan
PF01846	FF	FF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR002713	Domain	FF domain	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR036517	Homologous_superfamily	FF domain superfamily	Interproscan
IPR039726	Family	Pre-mRNA-processing factor Prp40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11864	PRE-MRNA-PROCESSING PROTEIN PRP40	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12821	PRPF40, PRP40; pre-mRNA-processing factor 40	-	Spliceosome	ko03040	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_29777-3.6 global RNA-seq network