Gene detail

Detailed information of Bpl_scaf_28109-2.29 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_28109-2.29	UNCHARACTERIZED	Bpl_scaf_28109	186744	220199	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_28109-2.29

ATGGAGAGAATTGCTTCCCTTGTATCAGAGTTGAATGCATGGGATCCAAAACGTGTAGAAGAACCAGATTACCTGCGTCGTCTGGCAGGGTTCAGGGAGGTCAATTCTGTCATCAAATCTATGACAACACTAGATTCACAATTTTTACATGCAGTTTTAATGAATTCTTGTTTCTTTATTAAAAGTGTTGATGACCTTTCCTTGAGAGATAATGCTACAAACTGCCTAGTAACCATGGTAACACAGTTTGGCGTAGTTGAATATGACCAAGGTGTATACAGAGAGATAATAGCTCAAAGTTTACTGCCAGAGGTCAAGAAAGGAAACATACGACATGAATTTATTTTACTATTGTCCAAATTGGTTGACGTGTTTCCTACCAATCCAATGTTTACAGACCTTTGTCTGCTGCGAGATAAAGATGTAGAAGCTGATTTCTTTGAGAACATAAGACACATTCAGACGCACAGGAAATCAAGAGCACTGCGTAAAATGATAAAACAGATTCAAGCTCACCCAGTGAAGAAAGAGATTATTGTGTCATACTTGTTACCAATCACGGAATCGTTTTTAATGGACGAGAAATACGCCAAAACACAAAATGTATTGGATGTAGCCGTTGAGAGCCTGGGAGTCCTGTGTAGGCTGTTACCATGGCAACCATTTGCAGATCATCTGAAATTTTACCTCGCACTGATGCAAAAAAGACTTGACAAGAATAAGCATTATGTGAAGATTATTGTGATCAAATCAGATGAAGAACATAAGATGGCTGGTCAATCTGCCTACCCTGAGGATACAGAGATTTTGAGGGTACCTCTTGCCTTGGCTATGGTCAAGTTACTACAGAATTTACCTCAGAAAACACTGGAACAAAGTTTACCTGGCATACTTTTGAAAGTTTGTAATTTTCTAAAATCACGAGCAAAAGATATCAGGCTCCATGTTCTTGGATTTACTCTGCACACATTACTTAGGAATCTGTCTTCTACCATCAAACCAGGAGAATTGGATTTCTGTAGAGCAAGTTTACAACAGGTTTTCCATGAAGAATTATTTGGTAATGTTGCTGAAGAGAAAAATGTTGATGCTATCAAAGGCAAGGTATTCGAGGCCAAGACCATGAAGAGTTATGACTCTTACCAGATCTTAGCTAGATTTATAGGAATGGGAGCTTTGTCAGCTTTACTTCAACCATTAAAACAGGTTCTGGATAGTACACAAAGTTTAAAATCTACAAAAAAGATACAGGAGGCTTTGAGGAAGATTGCCTATGGCTTGATAGACAATGTGTGTCCGAAATGTATTCGACAATTAAGTAATAAAAAGCCAAAAGAAAAGAAAAGTTTACGACCTCCAAGTTGTCTGCTTCTGCCACCGACACCAGCGTATGGCGGGGGAAAACCTAAACCCAACAAAAAGACTAATACACATGTTCTTATAGAATTTGGACTGGAGGTGAATATCATGTGTTTAAGATGTTTAGGCTGGTTGTTAAAATATCCATTACCATCATTGAAGTCAAACATACAGAAGATTGCACAAGGAATGTTTGTTTTGTTGAAAAACTATGCATCTGTTGGAGCAGCAAAGGGAGATAATTTTGAACTTATTTCATTGTTATTCAAGACAGTCACAGTGTTGGTTAGAGATGTGAAGGACCATGAAATAGATGAGAATCAGTTACATGTGTTATTGACTTTCTGTGAAGAAGATTTGTATGACCATAATAGACAGAGTACAGCATTCAGTCTGTTTAGGGCCATTTTGTCTAGAAAGTTACACACTGAAGAAATAGGAGAAATTGTGAAGAAGATCAGAGAAATGTCCATTACAGCTGACTCTGACCATATAAGGAGAGAATGTAGACAGATAATTTCTCAGTACATAATGGATTATCCTCTAGGGAAAGCTCTGGCAGGCCATCTTGAATACTATGTTACTCAGCTGTCTTATAAGATAGACACAGGCAGAGAATCAGCTCTAGAAATGCTAGCTACCATATACTCTACCTTTCCACAGGGAGATGAAGATATAGATCATTTACTGTACAACATTCTGAATCTGCTGACAAAATTATGTTCAGAAAGTAACATCATTAGAGACAAACAGTATACAGAACAACTTAATGATATCTGGGGTCATATCAAGTCATTATTAATGTATCCACACAATTGGGTTAGGACGTCAGCAGCTCAGCTGTTTGGACTACTGTTTGCAGCATGGAACCCTGAAGATATGATAAAGAAAAATGAAACTGTGTCAGAATATCTACAGATCGATACAATAAAAAAGGTGGCTAAGCACCTGGCCGACAATGAAGAACATCGGTTATCTCTGCCGTGGCTGGTCAGGAAGATGGTACGAGAGGCAAACCATGAAGTTGTCAGTAACACTATGTCTACAATGAAGGTGAGTTATGTACCTTGTCAGGAAGATGAACTAGCAGACCAAGTCATCAAGAACATGGTGTTCATTACTAAGGTGGCTAAGCACCTGGCCGACAATGAAGAACATCGGTTATCTCTGCCGTGGCTGGTCAGGAAGATGGTACGAGAGGCTAACCATGAGGTTGTCAGTAACACAATGTCTACAATGAAGGAAGATTTATGGGAAGCAAACCATGAAGTTGTCAGTAACACCATGTCTACAATGAAGGTGAGTTATGTCCCTTGTCAGGAAGATGGTACAAGAGATGTAGATCTTAAGAGACTGGCACAGGAAGTAATGGATGTTATCAAACAGATCGTGGGCATTGATACGTTTACAACAGTGTATGCTGAATCTGTCACTCATCCTGAAATTGCTGCAAGAAGAAAGTTAAAGAAGAACTTAAATAAGAAAGAAGCTAAGAAAAGGAAATTAGATGACTTTAGAGTTAGCAAAAAAATAAAAAGGAAGAAAATGAAATCGTCCTAA

Transcript

Bpl_scaf_28109-2.29

AATAATTTCAAGAACATGATTGTATGGTAATAATAATGTAACATTGAATTTTACAGACAAATTTGTAACCTTTGTGGTCATATACAGAATCGTCAAGGAAGGACTTTAATCTGTGATATTTTAGAGGTTATTGGAACTGGTGATGAGAAGATGGAGAGAATTGCTTCCCTTGTATCAGAGTTGAATGCATGGGATCCAAAACGTGTAGAAGAACCAGATTACCTGCGTCGTCTGGCAGGGTTCAGGGAGGTCAATTCTGTCATCAAATCTATGACAACACTAGATTCACAATTTTTACATGCAGTTTTAATGAATTCTTGTTTCTTTATTAAAAGTGTTGATGACCTTTCCTTGAGAGATAATGCTACAAACTGCCTAGTAACCATGGTAACACAGTTTGGCGTAGTTGAATATGACCAAGGTGTATACAGAGAGATAATAGCTCAAAGTTTACTGCCAGAGGTCAAGAAAGGAAACATACGACATGAATTTATTTTACTATTGTCCAAATTGGTTGACGTGTTTCCTACCAATCCAATGTTTACAGACCTTTGTCTGCTGCGAGATAAAGATGTAGAAGCTGATTTCTTTGAGAACATAAGACACATTCAGACGCACAGGAAATCAAGAGCACTGCGTAAAATGATAAAACAGATTCAAGCTCACCCAGTGAAGAAAGAGATTATTGTGTCATACTTGTTACCAATCACGGAATCGTTTTTAATGGACGAGAAATACGCCAAAACACAAAATGTATTGGATGTAGCCGTTGAGAGCCTGGGAGTCCTGTGTAGGCTGTTACCATGGCAACCATTTGCAGATCATCTGAAATTTTACCTCGCACTGATGCAAAAAAGACTTGACAAGAATAAGCATTATGTGAAGATTATTGTGATCAAATCAGATGAAGAACATAAGATGGCTGGTCAATCTGCCTACCCTGAGGATACAGAGATTTTGAGGGTACCTCTTGCCTTGGCTATGGTCAAGTTACTACAGAATTTACCTCAGAAAACACTGGAACAAAGTTTACCTGGCATACTTTTGAAAGTTTGTAATTTTCTAAAATCACGAGCAAAAGATATCAGGCTCCATGTTCTTGGATTTACTCTGCACACATTACTTAGGAATCTGTCTTCTACCATCAAACCAGGAGAATTGGATTTCTGTAGAGCAAGTTTACAACAGGTTTTCCATGAAGAATTATTTGGTAATGTTGCTGAAGAGAAAAATGTTGATGCTATCAAAGGCAAGGTATTCGAGGCCAAGACCATGAAGAGTTATGACTCTTACCAGATCTTAGCTAGATTTATAGGAATGGGAGCTTTGTCAGCTTTACTTCAACCATTAAAACAGGTTCTGGATAGTACACAAAGTTTAAAATCTACAAAAAAGATACAGGAGGCTTTGAGGAAGATTGCCTATGGCTTGATAGACAATGTGTGTCCGAAATGTATTCGACAATTAAGTAATAAAAAGCCAAAAGAAAAGAAAAGTTTACGACCTCCAAGTTGTCTGCTTCTGCCACCGACACCAGCGTATGGCGGGGGAAAACCTAAACCCAACAAAAAGACTAATACACATGTTCTTATAGAATTTGGACTGGAGGTGAATATCATGTGTTTAAGATGTTTAGGCTGGTTGTTAAAATATCCATTACCATCATTGAAGTCAAACATACAGAAGATTGCACAAGGAATGTTTGTTTTGTTGAAAAACTATGCATCTGTTGGAGCAGCAAAGGGAGATAATTTTGAACTTATTTCATTGTTATTCAAGACAGTCACAGTGTTGGTTAGAGATGTGAAGGACCATGAAATAGATGAGAATCAGTTACATGTGTTATTGACTTTCTGTGAAGAAGATTTGTATGACCATAATAGACAGAGTACAGCATTCAGTCTGTTTAGGGCCATTTTGTCTAGAAAGTTACACACTGAAGAAATAGGAGAAATTGTGAAGAAGATCAGAGAAATGTCCATTACAGCTGACTCTGACCATATAAGGAGAGAATGTAGACAGATAATTTCTCAGTACATAATGGATTATCCTCTAGGGAAAGCTCTGGCAGGCCATCTTGAATACTATGTTACTCAGCTGTCTTATAAGATAGACACAGGCAGAGAATCAGCTCTAGAAATGCTAGCTACCATATACTCTACCTTTCCACAGGGAGATGAAGATATAGATCATTTACTGTACAACATTCTGAATCTGCTGACAAAATTATGTTCAGAAAGTAACATCATTAGAGACAAACAGTATACAGAACAACTTAATGATATCTGGGGTCATATCAAGTCATTATTAATGTATCCACACAATTGGGTTAGGACGTCAGCAGCTCAGCTGTTTGGACTACTGTTTGCAGCATGGAACCCTGAAGATATGATAAAGAAAAATGAAACTGTGTCAGAATATCTACAGATCGATACAATAAAAAAGGTGGCTAAGCACCTGGCCGACAATGAAGAACATCGGTTATCTCTGCCGTGGCTGGTCAGGAAGATGGTACGAGAGGCAAACCATGAAGTTGTCAGTAACACTATGTCTACAATGAAGGTGAGTTATGTACCTTGTCAGGAAGATGAACTAGCAGACCAAGTCATCAAGAACATGGTGTTCATTACTAAGGTGGCTAAGCACCTGGCCGACAATGAAGAACATCGGTTATCTCTGCCGTGGCTGGTCAGGAAGATGGTACGAGAGGCTAACCATGAGGTTGTCAGTAACACAATGTCTACAATGAAGGAAGATTTATGGGAAGCAAACCATGAAGTTGTCAGTAACACCATGTCTACAATGAAGGTGAGTTATGTCCCTTGTCAGGAAGATGGTACAAGAGATGTAGATCTTAAGAGACTGGCACAGGAAGTAATGGATGTTATCAAACAGATCGTGGGCATTGATACGTTTACAACAGTGTATGCTGAATCTGTCACTCATCCTGAAATTGCTGCAAGAAGAAAGTTAAAGAAGAACTTAAATAAGAAAGAAGCTAAGAAAAGGAAATTAGATGACTTTAGAGTTAGCAAAAAAATAAAAAGGAAGAAAATGAAATCGTCCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07539	UTP20_N	U3 small nucleolar RNA-associated protein 20, N-terminal	Domain	Interproscan
PF20416	UTP20_C	U3 small nucleolar RNA-associated protein 20, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011430	Domain	U3 small nucleolar RNA-associated protein 20, N-terminal	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046523	Domain	U3 small nucleolar RNA-associated protein 20, C-terminal	Interproscan
IPR052575	Family	Small subunit processome component 20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17695	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14772	UTP20; U3 small nucleolar RNA-associated protein 20	-	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_28109-2.29 global RNA-seq network