Gene detail

Detailed information of Bpl_scaf_25972-6.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_25972-6.11	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	Bpl_scaf_25972	624297	647675	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_25972-6.11

ATGTCTGACATTGTGTGTAAAATACTTGGTTGTGACGAGACCGATGGATCTGTAGTGGAAACAGGAACAGTTGTTGAGAGATCAGACTTCTTAGACAATAATGACAGAAATGAGAAACTTGGTCCAATTCAACAAAGCCTTGACAATTTGAGAAAAATTATTACCAACCAAAATGATTCAGATAATTCTGCAGTGGAGATTGATGATAATCCTATTAAATCAATCTGTATTGAAAATTATAAAGAAATTACGAATATTGATGGTGGAAAAAATAATGAACTAATAAAAGGTGCAGAAACAGGCAATTCTGACAGAACAGTTCAACTGGAAACTATCGTTACTGATAAAATAGCCATGGTAGACAGTGTAGACAAAATTAACAGCTTTGTAGTTGAAAAAGCTATCAATAAATGTCATGCTTCAGACACACGATCGTCTGAGAATAATTCATATACTACTGCCCAGTTAGAGAGTGCACCATCGTCTACAGAACCTACACTTCAGAATGTACAACCAATCATTGTGAATATAGAAACCACAGACGATCCTGTCATCAGTCAATTTGATCCTTCACAATATCGAATTGGAGTTGAGGAGAAATCTGATGATTCTTCTTCATCTTCATCTGAAGAGGAGGTAGATCAGGATAGGTCAAGACAATCCAGTACTTCATCCCAAAATGACAAACAGACGAAGTTTACAAAAGAAGACATCAGGACTAAAGGGGAACTATTCCCTGAGGAGTTGCCTCCCTTGAAAGAGTTGATCATTACAGTGGATGAATGTGTCAGTTTAGTTGACATCGGAGATGTTGTTAGTATTGTCGGGATTTTAGTAATTGTTCAGTCCAATCAAAACATGCCACCATTAAATGAAGAGACAGTTATATTTTTAGAAGGCAGAGTTTCATGTGGAAAGATATTTGAAGTATTTGGACCAGTATCCTCCCCTTGGTATTCCCTGCGATTCAACTCTACAGAAGATATTGCAAACAAGGGCATTGCTGTAGGAACCAAGATGTTCTGTGCTCCCAAAGTAGATGAATATACCAACTTTGTTTTTGTAGAACATTTAAAACAAATAAAAGGCTCTGATGCATCATGGGAAGACAATAATGAACCCCCACCCAAGTTTATGGAGTTTTCTGATGATGAAGAAGAGAAACGATCTAAAGCTAAACAAAGGAATAAAAATAAGGAATCAAATGATGGAGACCAGATTCCTGGAGCTAAAAATATCAGACGCAAAAAACAAAAACAATCAAATGAACCAAGGACTGAACAGCAGACAAACAAAAAGTTTCAGGAAGATATTACACATACAAGACACCAAGAAGGAAGACAATTTTCTCCATTTGGTGGACAACGCAACAAATTTCAACCACGAGTGCCCAGTACTCATAACAACCAAAGATTTCCATCAGCTCAATGGAATAAAGGAAACTTCAGAAATCCTGACTTATTTGGAAGTGGCTCAGGGAGTTCTGGAAACATCAATATTGGAGGACAAGCTTTTACGAGAAACATTTTAAAAACAAATCCAGGAAATAAGGGACATACCTTTCAAGGAAATGCAGCGTCTGTCTGTCAGATGTCTGGAACTAATTATAACCAAGTTAACAATATAGGTGAACAATCGGTTATACCATCAGATTTCAGTAAACCGCCACCAAACTTTAATCTTTGTTCCAGCATGAATACTGAGAACATAAACAAAAATAGTACTTACATGTTACCACAACATAATTCACAAAGGTCAAATGAATTTGGTCAGATCTGGCAAGAAGCCGGAAGCAGAAACATAAACTGGCAACCAAACTTCTCATTTAGTAATACAGAGGCACATACCACATATAACTCACACTGTCAGGCCTCTGTTAATGCAGGCAATTATGATAGGGGTAGTTTCCCCATAGACCCCTGTCAACCACCTGCCAATACTGGTGGTAGATGCTTTGGTGATGGTGAAAATTCTAGTAACTATGGTAATGATCTTAATATGGATCACAGAGAAAGAGGTCATTTTTTGTTCAATGGAAGTTGCACTGCCAAAATGAACAATACAGATAATAATTCTTATAGTGTGCCCAATAATAACAGTTATTCAAGAAACCAAGAAGATTTTCCTTCAAACTGGCAGTCACATACAGGACCATTTCAAAATACTGCACAAACAAATTCCGAACCATTGCAAAGTACTACATCTGCAGTAGATAACAGATATAACATGAATTATAACAGTCCATCTGTTAGACAACAACTACCATTACAGTCTTACCAACCAAGGTTTGGTGGTCAACCACAATTCACTAGAATTAATAGGCCACACTGA

Transcript

Bpl_scaf_25972-6.11

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04410	Gar1	Gar1/Naf1 RNA binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007504	Family	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR038664	Homologous_superfamily	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	Interproscan
IPR040309	Family	H/ACA ribonucleoprotein complex non-core subunit Naf1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31633	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000493	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005732	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14763	NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1	-	Ribosome biogenesis	ko03009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_25972-6.11 global RNA-seq network