Gene detail

Detailed information of Bpl_scaf_25632-0.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_25632-0.16	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	Bpl_scaf_25632	58338	77119	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_25632-0.16

ATGAAATGGACTGAAGAAGTAAAGATATTAAAAATAAGATCACTGTTAGTCAGTGAGGCAAGAGAAGTGTCACAACAAACGTGTAAAACATACGATGATCTACGAAAGGCACTTGTAGACCGATTTGGTAAGAAACCGTATGAGTATTTCAATATTCTGTCCAAACTGCAAAAGAACAATGACACGTATCGTGGACTAATGGGGAAAGTCGACTTGTATCTTACCAGATTTTGTGAAAATCGGGATTCATTGGAATGCTTAAAAGAAGAATTTTTTCTCAAAGCCCTACCACTGCAACAAGCCCAATGGATTCGCAGAAACAAAGGATCAAGCTCTAATACAAGTGACAAAAAACATCACAATTTAACATCATATACACATCTAAAACCTGTCGACACATCTAGACAGACAAAAGAAGTCAAATTCAGAGATAAAACCTGCTACAAATGTAAAAGGACTGGACATTTGGCGTTTGAATGTCGTACATTCCCAGGTAAAGAAAAACAACGTCAAAATCAGGCTTCATGTTTTGTGCGTGGTAATATAGGGGAGAAACTTATTAATATTCCAGGAAAAGTTAAGAACGGAGAAATATCATTTGTAAAAGACACTGGTAGTGACATGACCCTTGTTCGGGAAGACTTAGTAGATACTAATTGTGTGCTACAGGGACAAACTGCTACGCTGTATACAGCTATAGGACAACCATTTAATGCGAAATTGGCTGTTGTCGATTTAGAAACGCCTTACTACAAAGGGTACCATACAGTAGGCCTAGTACCAAATCTAGCTGCCGAAGCATTGCTAGGAATGGATGTCATGACTAAACAGCATACATGTGCATTAGCTGTTACCCGTGCACAATCTAAAAAGTACAAAAAGTCTGAGGAAGAGGCTCATATAGCAGCGGAGAAATGTGGTGTTCAACCTACAAATATATCTAGAATTGAAGAAAATGAACAAGATAGAATAGTAGATTCTAGTGATGAAGAAACTGATATGGAAGAAGATGTCAACATTGAGAATATTTCTAATGGCTTTTACCCCAAACCAGCATATTGTTTTTCTAAAATACAACCAAATAATTACCTCCTGAAAGGATACAAAATTCCTGTGATTGAGAACATGGGAGCTACATTGGATCAGTTTGATACAATAGACCTATCTGATAATGATATTAGAAAGTTAGATGGATTTCCATTACTCAAAAGACTCAAATCTTTGTTGGTGAACAATAACAGAGTGGCAAGGATATCAGACTCTTTAGCAGAATGTATACCAAATCTGGAATCCTTAATATTAACAAATAACAGTATGCAAGAGTTAGGAGACTTGGACTCCTTAAGTTCACTGAAATCCCTTACCTACATTAGTTTGTTACGGAACCCTGTTACAACAAAGAAACATTACAGATTATATATTATATTTAAAGTACCACAGTTACGAGTAATAGACTTTCAAAGAATTAAACAAAAGGAAAGAGATGCAGCGTTAAAAATGTTTAAAGGAAAGAAAGGTCAAGAAAGAGCTCAAGATATTGGAAAAAGAAGTAAAACTTTTGTTCCTGGGGAAAAATTGGTGGAGAAAACAGGGCCATCAAAAGAAGATGTGGAATTAATAAAGAATGCCATCGCTAATGCCAAAACATTAGAAGAAGTTGAAAGGCTAAACCAGATGTTAAAAACAGGACATATACCTGGCAAAGAAATCAAAAGACTTAGAGGAGAAGTCGTTGAAGAAGAAGAGATGGAAACTGTGAATGGAACATGACAGGAAACAAGAACAAAGATTTAATTTATTGGTGCAATCCAGGCTAATACTGTATATATAAGAACTTTGCCTATTATTTCAGCATTGCATGTTAAATGTATGGGGGATTGTTAGAACTTGTACATTTACATTTTGTAAGATGAACAAATCTCTCTGAATGAGTTGGCAACTTAAAAGTATCATCAACCTGATTTTTGAATATAGATATTATTTTTGATCTGGCATTTCACTAGAAAAAAATCTTATATTTCATTCTAATTATTGATTTCAGGTCATCAGCTTAGTGTTGAAAGTTTGAATGGCTGGAAATCTGCATTTATTTCTTATGCCAAATTATGTGTTTTTTGTAGGTTAGTTATGTAGATCATCACTATTGCCCCTGACTGACCACTGGTTAATTATCTCATTTGTTTAAATGATATCAGTAATTCAAAATTGAAGCATGTTTGAAAATGTCCAAAATTTTGTGAATTTTATAGACAAATGGTAATATTTTATGACATATTCAAGAAACAAATTATAGAACTATTGTAAAAATCTTTTGAAATAGTCCAACAAAAATTTGGGTGAATATTGCCATTTTTCTTACAGTGACTGTTGGAATAGTGCTAAGTTAAAGATGTACATATGATAATTTTGTATCAGTAGTTCAAAGGTCAGGTTGATTTCCATTGTATTATGTATTAGATACTAAGTGTTGATAAGATACACTATACTACACATTGGGTTATTGTACATTTATATTGATATTAAATGTAATAAAGGTTGAGAACGATATATTATATTGTTTTGTTATTTCTCCTGGTATAAGAAATTCATCCATGTAATATTACTGAAACACTGTACCGAAGCTGAACTTTTATATTACTGTGTAGGACTTTGCCAATCCTGAATAAATGTTAACGGCTTCGGTGGTGTAATGGTTAGCATGCTAGCCTCGAGTGCTGTAGATCATGGTTTCTAGCCCAGGGCGGGTCAAACCAAAGACTATAAAATAAATTGGTATTTGTTACTTCTCTGCTAAACCTGCAGCATTAAGGTGAGAGAGCAAAGACTGGTGGCTTGCAATCTGGAATAATGTGTCCAAGTGGAGGGACATGTCTATCTGCAGACTATAGTTTCTGTGAGCTAGCACTATAAAAAAAAAATACAACTAAGACATGTTGATCCAGTACAAAGTGAGCATCATTATCATCTCATTGAAACTTAGCTGAAAAATTGCTGAGTTGGCGTTAAACAACAATCACTCGCTGAACAAATGTATTGCAATTTGTATTAAAGGGGCATAACTGCATAACAGTAAATAATAAACGACATATGATATAAAGAGCAATATCACATGACAACGATGGTGCTTGTTTATTATGTGCTAAAATGTACCTGTATAACATGTATAATATTTGGATGATAAAAGATCAATCAAGGTAAATAGTCACTGCAATATTGGAAAACTCAAAATATTGCTGTTATAAAGAATTTGTTGGAGGAAAAAAATACTTTAACATTTTCCAAACATTTTGACAAATTGTTGCCTCTCATGTCCAGAGGCATGATTCAGTCAATTATTTCTGCATGTTTATACCAACACTTCTGGATCAATTTGAGTTGTCTGTTATCTGCATCACAATATACTTGTAATAAACACTTACTTTTAAATGCTAATGGTAGGTCAGATATATGTTTGACATGATTTATTGTCTGCATAATCGTGATCTTTTTTATTTAGTTCACCTGACCCAAAGGATGATGGTGTTTAATGCCACTTTCAACAATATTTGAGTTATATCGTGACCCAAAGGGTCATCTGAGCTATTGTCATAACACAGTATATCTGCTAACCACAGAACAAAAATTAGACTAAACTGACATGTTCATTTAAAGTTGTGTACTAATTCATGGAGGTATATAGCTTCATTTGACTAAGTGTTGTTGCTTTTGTACAATTGGGGTAACATGACCACAACATCATTAAATAGTCGAGTCTATTCTATTGTTGAAATTTCAAAGATCTGTTTATACACAACATAACTAGTTGAAACCTGTTATGGTTAGATTGTTCTTCATAAGGTGCTTCCAAAGTGCTATTGTTCTGATCAATCGACCAATATGACTGCTTCAGGGGGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14580	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10552	U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005686	Cellular Component	U2 snRNP	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030620	Molecular Function	U2 snRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11092	SNRPA1; U2 small nuclear ribonucleoprotein A'	-	Spliceosome	ko03040	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_25632-0.16 global RNA-seq network