Gene detail

Detailed information of Bpl_scaf_24781-3.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_24781-3.13	LEPRECAN 1	Bpl_scaf_24781	325570	363267	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_24781-3.13

ATGGAAGATGCAGACGGCAATTTTGTTGATCAAAGTTTTAAAACTACATCATATTTTGTTCAGAAGTGTATTTTACTCTTGATATTGTGCTGTATAAAAACAAATAGTCTCAGTGAAGACATAATGGTGTCATACGATCATTTATACACCTCTGGTTTGAATGCTTACAACGATGGAAAATGGTTTCAATGTTCTGCATTTTTGGAAAAAGCTATTGAAGAAAGGAAATTTTACAAACGAACTCTTATTGATTGTCGTTTAATGTGTCGGAAAATTTTACAAATTTCAGATTTCTTTATTCCATCAGATATGAATAGTTCTGTAGAAAGTTTAAGAATTGACTTTTTTGAAAAACTAGTGAGGGAGTCACAATGTCTGAAAAAATGTAAATCAGAAAAACTTGGACCACACATGCACGATAGTCGTGTGATGCCTTCAGTAGATGAGGATTTTGATCGTCTCAAGCCATATTCCTATTTACAGTTTTGCTATTATAAGTTAGAGAGATATACAGATGCTGCATGTGCAGCATACACATTCTTCTTAAAGAACTCTGAGGATGAGGACACGATAGGAAACATTCGCGAATATAGAGAGAATTTTAAAGTTAAAGATGAAGACTTCAGGAATATGGAGAAGGTTCTATATCAGGATTACAGAATAAAAGGAGAGTCGGCTTATGATGAAAATGATTGGACTAATGTAATAGAATGGACAGAGCTTGCCATTGCTGAGTACTATAATGAAGAGGAGAGATGTCAGTTGGAATGTGAAGGCCATTTTGATCACCAGTCTTTTCCAGACTTCATTCAAGCTATAGCTGATCATTATATTTCTGTGTTACAGTGTCAGTTTAGATGTGAGAAAAAGTTGAGCGTACTTTACAAAGAATATCTACCAGACTATGTCGGACAGCATTACAATTATCTCCAGTATGCTTACTACAAAAATGGACATACAGACAAGGCAGTGGAGGCGGCAGCTACGTATCTGTTATTTAACCCAAATGATGCAGAGATGTTACGTAATAAAGCCTACTACATACAAAAACTGGGGTATCACCAAGCTCATTTTGTGCCACGTCAGGAAGCTGTAAGCTATGTAAATCGTAGAGATAAGATGTTAGAGTTACTGTATTTTATAAGAGATAAATATGATATAAAGGATGAAGAGGATTTGGGAGATGAAAACAAAGAAGAAAATTTGATAGAAGAGGAATTAGAGAAAATTCAGATGATCAACCCTGACAATATAAAAAGTAGCAAATCTAACTCCATCTTACTAAACAAAGAACATTACATGGGCGTCTACAATAAGATTGGTATTAAAATCAAGATGGATAAGAATGATAGATTTGTAGCTGATGAATTCTACAGAGAAGATCAGTGTCGGGAACTTATCAGCTTTGTCAATACAAAAGAAGCCAATTCTGATGGTGTAAGAGTTCTGACTGTCTCTGATGGCTTACAGATTATTAAAGAAAATTTAGAGTTTGAGATTTCATTGAGATTGTTTCTACGAGCCAGTGAACTGACTCGTCACTTTTCGGCACATTTCTACAATGAGTCAAGCTACTTCATCAAGAAAGCTGTAATTGTTTGTGTTGATCCTAAGCCAGATCAAGAAGTAACAGATGATTGTATACCACAAGAAGATGGCAGTTGTCTAACAGAAGATGACATGGATAAAAAAGAATTACAACAAAATAATGAATACATTGTGGTATCATTTCTGACAGAAGAGGAAAAACCAGGTCATTTTAGTTTCCTTGATAGAAGACATAGAAAACAGCTCACTGTTTCATCCAAATGTGGGAGAATTGTTGGATTTAAATCTTCTGAAAGATACAGATCTGATAGATCTGATTCACAGAGATGCTCTATGATTTTAACATTTACAACAAATCGTACGGAGGACAACCCTTTACACAGGAATGCTTCATCATATCTACTTAGTTTAGAGAAAGGTCGTGCAGAACCTAGAGAAATAGACAATAAAGTTATAATGAAGAAATTTCACAACGATGGGGTAGAAATAGTAATGGCAGAGAAGGAACTGAAAAGTAAAGAAAGATTTGTAGCTGATGGACTTATGACAGAGGAACAATGTCAGACATTAATGGATATCACACAGGAAGGTGCCCTGAGTGGAGATGGATATAAACTTAAACCAGAATCTCCCCATAGTAAACATGAAACATTTGAAGGTTTAACAGTCAGCAGATCTACAGAGTTAGCACATGTTGGTGTGATCAGTAAAAAAGCAGCCAATCTTTATCTTGATGTGAGTGAATATGGCCGACTTCTAGTGGAGAAATACTTTAACTTAACAAAGCCATTGTACTTTGATTTTACACACTTGGTTTGTAGGACAGCAGTAGAAGGATTACAAGATGATAGAACAGATTTAAGTCATCCTGTCCATGCAGACAACTGTTTACTACAGGCTGATGGGACTTGTCACAGACAGTTCCCTGCTTATGTACAGAGAGATTATAGTGCAGTAATTTATCTGAATGATGATTTTGAAGGTGGAGATTTTTTCTTTGCTCATCGTAACAGATCAGCTGAGGTATCTCTGAGACCCAAATGTGGTAGAATTGTTGGATTTAATGCCGCAGAGCTTCACGGTGTCAAAGCTGTGGTCAAAGGTCAGCGTTGTGCTCTAGCTATGTGGTACACTATGGACTTAAATCATAAAGAATTAGCTCGTATACAAGCCAAGAAGATACTGGACAAGATATCTGATAAAACTGAAGAAAATGTACATGAGGAATTATGA

Transcript

Bpl_scaf_24781-3.13

TGTAATGTGACCAAAAGTATATTTCCGCGTGATGTCTTCAACCTCTAAATGACTAAAATAACTAAAGGGGACAAACAAATGTATCTGATGTGAACTGTGCCAATTACCCACTTAGTGCACGCCTTCATTCAATGCATCATTTCCTTTGCTGAGATGTACCAGGGGAGGTCATAGAGAGATGTACGCTATGTCGGCCGCCATTAAAAACATGACATCCCCTGATTCAGCCTTTACCTGACCCCGATAACAACAACAAAAATCCGAGGGGTCACGAGTACCAGACTAGGATTCAGCCTTTACCTGACCCCGATAACAACAAAAAAATCCGAGGGGTCACGAGTACCAGACTAACCAAAAACATAAATTTTCGGAACTTCTTTAGTCTTTACCATTCCTACACGTGTCACTTTTCAAGATGGAAGATGCAGACGGCAATTTTGTTGATCAAAGTTTTAAAACTACATCATATTTTGTTCAGAAGTGTATTTTACTCTTGATATTGTGCTGTATAAAAACAAATAGTCTCAGTGAAGACATAATGGTGTCATACGATCATTTATACACCTCTGGTTTGAATGCTTACAACGATGGAAAATGGTTTCAATGTTCTGCATTTTTGGAAAAAGCTATTGAAGAAAGGAAATTTTACAAACGAACTCTTATTGATTGTCGTTTAATGTGTCGGAAAATTTTACAAATTTCAGATTTCTTTATTCCATCAGATATGAATAGTTCTGTAGAAAGTTTAAGAATTGACTTTTTTGAAAAACTAGTGAGGGAGTCACAATGTCTGAAAAAATGTAAATCAGAAAAACTTGGACCACACATGCACGATAGTCGTGTGATGCCTTCAGTAGATGAGGATTTTGATCGTCTCAAGCCATATTCCTATTTACAGTTTTGCTATTATAAGTTAGAGAGATATACAGATGCTGCATGTGCAGCATACACATTCTTCTTAAAGAACTCTGAGGATGAGGACACGATAGGAAACATTCGCGAATATAGAGAGAATTTTAAAGTTAAAGATGAAGACTTCAGGAATATGGAGAAGGTTCTATATCAGGATTACAGAATAAAAGGAGAGTCGGCTTATGATGAAAATGATTGGACTAATGTAATAGAATGGACAGAGCTTGCCATTGCTGAGTACTATAATGAAGAGGAGAGATGTCAGTTGGAATGTGAAGGCCATTTTGATCACCAGTCTTTTCCAGACTTCATTCAAGCTATAGCTGATCATTATATTTCTGTGTTACAGTGTCAGTTTAGATGTGAGAAAAAGTTGAGCGTACTTTACAAAGAATATCTACCAGACTATGTCGGACAGCATTACAATTATCTCCAGTATGCTTACTACAAAAATGGACATACAGACAAGGCAGTGGAGGCGGCAGCTACGTATCTGTTATTTAACCCAAATGATGCAGAGATGTTACGTAATAAAGCCTACTACATACAAAAACTGGGGTATCACCAAGCTCATTTTGTGCCACGTCAGGAAGCTGTAAGCTATGTAAATCGTAGAGATAAGATGTTAGAGTTACTGTATTTTATAAGAGATAAATATGATATAAAGGATGAAGAGGATTTGGGAGATGAAAACAAAGAAGAAAATTTGATAGAAGAGGAATTAGAGAAAATTCAGATGATCAACCCTGACAATATAAAAAGTAGCAAATCTAACTCCATCTTACTAAACAAAGAACATTACATGGGCGTCTACAATAAGATTGGTATTAAAATCAAGATGGATAAGAATGATAGATTTGTAGCTGATGAATTCTACAGAGAAGATCAGTGTCGGGAACTTATCAGCTTTGTCAATACAAAAGAAGCCAATTCTGATGGTGTAAGAGTTCTGACTGTCTCTGATGGCTTACAGATTATTAAAGAAAATTTAGAGTTTGAGATTTCATTGAGATTGTTTCTACGAGCCAGTGAACTGACTCGTCACTTTTCGGCACATTTCTACAATGAGTCAAGCTACTTCATCAAGAAAGCTGTAATTGTTTGTGTTGATCCTAAGCCAGATCAAGAAGTAACAGATGATTGTATACCACAAGAAGATGGCAGTTGTCTAACAGAAGATGACATGGATAAAAAAGAATTACAACAAAATAATGAATACATTGTGGTATCATTTCTGACAGAAGAGGAAAAACCAGGTCATTTTAGTTTCCTTGATAGAAGACATAGAAAACAGCTCACTGTTTCATCCAAATGTGGGAGAATTGTTGGATTTAAATCTTCTGAAAGATACAGATCTGATAGATCTGATTCACAGAGATGCTCTATGATTTTAACATTTACAACAAATCGTACGGAGGACAACCCTTTACACAGGAATGCTTCATCATATCTACTTAGTTTAGAGAAAGGTCGTGCAGAACCTAGAGAAATAGACAATAAAGTTATAATGAAGAAATTTCACAACGATGGGGTAGAAATAGTAATGGCAGAGAAGGAACTGAAAAGTAAAGAAAGATTTGTAGCTGATGGACTTATGACAGAGGAACAATGTCAGACATTAATGGATATCACACAGGAAGGTGCCCTGAGTGGAGATGGATATAAACTTAAACCAGAATCTCCCCATAGTAAACATGAAACATTTGAAGGTTTAACAGTCAGCAGATCTACAGAGTTAGCACATGTTGGTGTGATCAGTAAAAAAGCAGCCAATCTTTATCTTGATGTGAGTGAATATGGCCGACTTCTAGTGGAGAAATACTTTAACTTAACAAAGCCATTGTACTTTGATTTTACACACTTGGTTTGTAGGACAGCAGTAGAAGGATTACAAGATGATAGAACAGATTTAAGTCATCCTGTCCATGCAGACAACTGTTTACTACAGGCTGATGGGACTTGTCACAGACAGTTCCCTGCTTATGTACAGAGAGATTATAGTGCAGTAATTTATCTGAATGATGATTTTGAAGGTGGAGATTTTTTCTTTGCTCATCGTAACAGATCAGCTGAGGTATCTCTGAGACCCAAATGTGGTAGAATTGTTGGATTTAATGCCGCAGAGCTTCACGGTGTCAAAGCTGTGGTCAAAGGTCAGCGTTGTGCTCTAGCTATGTGGTACACTATGGACTTAAATCATAAAGAATTAGCTCGTATACAAGCCAAGAAGATACTGGACAAGATATCTGATAAAACTGAAGAAAATGTACATGAGGAATTATGATAGAAGAGAGTTATAAAAATCAAATTTAGTCCCAGTTTTTGACATTGTTGCAAAATTTAATTTTTACATTTTATATTTATTATATATATATGGTTTTATTGTACTTATTGTCCCCCGACGCTTCGTCGAAGGGGACTATAGAAATGGGTGTCGTCCGTCCGTGTGCTTTTTGGTTTCCAGATGATAGATAACTTGTGAATGAAAAGTCAGATTGAAGCTAGGTTTGGTATGTAAGTGTATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039575	Family	Prolyl 3-hydroxylase	Interproscan
IPR044862	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14049	LEPRECAN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0019797	Molecular Function	procollagen-proline 3-dioxygenase activity	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan
GO:0032963	Biological Process	collagen metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08134	P3H1; procollagen-proline 3-dioxygenase 1	EC:1.14.11.7	Chaperones and folding catalysts	ko03110	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_24781-3.13 global RNA-seq network