Detailed information of Bpl_scaf_24370-8.24 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_24370-8.24U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITBpl_scaf_24370820665844099-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors Familyzf-CCCH

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR009145FamilyU2 auxiliary factor small subunitInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0030628Molecular Functionpre-mRNA 3'-splice site bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0089701Cellular ComponentU2AF complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12836U2AF1; splicing factor U2AF 35 kDa subunit-Spliceosome ko03040PMID: 28812709
Shigellosis ko05131PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_24370-8.24 global RNA-seq network
TOP