Gene detail

Detailed information of Bpl_scaf_24314-4.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_24314-4.13	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Bpl_scaf_24314	424500	451729	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_24314-4.13

ATGGAGTTTAGCAGTGGTGTACAGAGTGATGGTTTGCCAACATGGAGACAGGTTTTATCTGCAGGGGACCAGTTATTTGATTCTGATAATCTGCTAGAGAGAGTTAACAAAGAACCACAACTCCGTTTCGCTTTAATGGGAGATAAATCTGTCACCATCACACCATGTAATCCTGCACCATCATGTAAGAAGGTTACCGATTGGATGATTGGAAGACAAAAATATAAAAAAATACAATTCAATGGAAAAGAAACATGTGAAAAACAGGATGGCAAAGTTGATAAGAATATTGATAATACTGTAGAAATACACTGTGATAAACCCTGCAAACTTGTGAAACCAAACAACCTGTTGACAAATGTTAGCTTTAGTGAACCTTGTGATAAAAAACTGTCTTTTTCTGTATGTGATACTGACACGTTAACCAATCATAATGTTAAAAAGTCATGTGATACTTTCAAATCGACAAATCTAATTAATCATCACAATCTAGAAAATTCTGAAAATTTAAGCAATAGTCTCATCAATTCTACGAATGAACTGAGTGTAAATAGGTCAGTCTTGGAAGAAATCAACGATAATACCGATGAAGATGATATGATTGGTCCATCTCCCCCGGATTCTGCACAACCGATATCACAGTTGTGTCGAACTATTAGCGATAGACCCATAAAGAAACTTAAACTGTTTTCATCCCAACATAACGGTGAATTTACTCCATCATTATCCAATCACAGGTCTCGATTTATATCCCCATCACCGACGATATTGTGTAGCCAACGATCCGTTGTTGGAAAATCTCCCAGCCTTCACAGTACTCCTGTTACTAAAAATAGACATTGTGATTTGATATTGCCAGCCTGTACACCAATAAATCATTTGGACACACAGAAAGAATTTGTAACACCTAGACGTGTACCTTTGTCAAAGAAGACTTCAGTTGGCTCAGGGAAAGACATGAGAAAATCACTACAGCAATTTGCTACACCTGATCAGAAGAATAACATTTCTCAGATAGATGGTCCTACGCCAAAGAACTCGTTTGGATTTCAAATCAGTCAGCAAAATTTCCAGGATGCTAAAGCATTACATGAGGTTCAGAATTTGACTGTACTGAGTATGGAGTTATTAGCAGAGACAAGGGGAGACCACTTACCTGATCCAGAAGTAGATACTATCCAGGCTTTGTTTTACACAATACTAAATGATGTTCATCCTGACAAGGGTGCAAGGGAGACAACTGGAGTCATAATGGTGGACGCCAAGTCTGCAAAAAATCAAAAAGAGCAGGAAAAGTTACAAGGAAATTGTGACAACACATCATTACCTTCAAAAGATGCTTGTATATCACCCTCAACCCCATCATCAACGCCTGGTTCCCAAAAACCATCAACATCTAAAGATACAAGGCATTACACACCTATTAAGCCTTTAACTCCAGATTCTCAAAAACCATCTACATCTAAGGATTCTGGGAACAGGAAGTCATCCCCTTCTAGGTCAAGATCACCTAAACCATCAGCTCCTCCATCAAGGTCACCAAAGGTCAGCTCCTCATCTCCATCATCTAGTCAAGTACATTCCTCAGTACCTATTGAACAGACAATACTACAGAGATCTGGAGTGGATGGGAAGTTACAGGTCACTTATGTAGAGAAGGAAACAGATTTGTTCCAGTCTTTTATTGATCTTGTTATGAGGTATATTAATACAATATTTACAGATGGGATCCAGATATATTTGTTGGTTATGAAATACAGAAAGTATCATGGGGATATCTGTTACAACGAGCAGCTCAAGTTGGTATTAATTTGTGTTCCAAGATCTCAAGGATACCAGGTAACACTGAATATATATACCTTTGAGAATGTCATGTACCATGTACTACACCAGAGGGTACCTAAATACTCCTTCAGATCTCTTAATTCTTGGTACAATCATAGAACTCATCTTTACAGTGAATTTGCTAGAGTATTTGGTATAGAATTCTACCATGTTCTTTCTCGTGGATCTCAGTTTCGTGTTGAATCAATGATGTTGAGACTAGCTAAACCAATGAACTTCATCCCTGTCTCACCAAATGTCCACCAACGTGCCAGGATGAAAGCACCAGAATGTATACAACTGGTATTAGAACCAGAATCCAGGTTTTATCATGACCCAGTGGTTGTAGTAGATTTTCAATCACTTTATCCATCTATCATGATAGCCTACAACTATTGTTTTTCTACTTGTGTGGGGAGAATAGGACAACTGGAGAAAGCTCAGACTACTGGAAAGCTCAGTAAGTGTCTAGATCTTGCCATCATCATATTGTTTTTCTACTTGTGTGGGGAGAATAGGACTACTGGAGAAAGCTCAAAAATCAAAGATGATGTCACAGTTTCCCCAAATGGAGTTGTTTTTGTAAAACAGCATGTTAGAAAAGGAATTATATCAGCTATGGTAGAGGAAATACTGAACACAAGATTAATGGTGAAGAAGGCCATGAAGGAACATAAAAATGATAAGGTGGCAGACAGTATTGTTAGGAAAGCTAGAGAAACCTTAGAACGTTCCATCAAACTGGTTGAAGATACACCCAGATGGGGAGCTAAAGTTGTTTATGGAGACACAGATAGCATGTTTATCCAGCTGAAAGGGAGAAGTAAAGATGATGCTTTTAAGATTGGCTATGAGATTTGTGATGCTGTAACAGCCATGCATCCCAGTCCAATCAAACTGAAGTTTGAAAAGGTTTATTTACCTTGTGTGTTACAAACCAAGAAGAGATATGTAGGATTTAGTTATGAAACACCAGACCAGAAAGAACCAATATTTGATGCTAAAGGAATAGAAACAGTACGAAGAGATGCATGTCGTGCAGTGTCTAAAATTTTAGAAAGATCCATCAAAATTTTATTTACCACAAAGGATGTATCACAGGTGAAACAGTATGTACAGAACCAGTGTCGTAAGTTAATGGAGGGAAAAGTCAGCATGCTGGATCTGATCTTTGCCAAGGAGTACAGAGGAATGCCAGGGTATAAACAAGGGGCCTGTGTACCAGCTCTGGAAATATCCAGGAAGTTACTGAGATCAGACAGAAGATCAGAACCTTGTGTTGGAGAGAGAGTTCCATATGTGATTGTGTATGGAAGCCCAGGTCTACCACTAATACAACTAGTTAAACAACCATCTGAACTGTTGATTGATCCATCACTTAGGATTAATGCTACTTATTACATCACAAAACAGATATTACCTCCCTTGGGAAGGATGCTCTCACTGTTGGGTGTTGATGTATTCTCTTGGGTACAATTTCCCAATACTTTGCTGCCTCCAATTGTCCAATTTGTGACAAACCAACCAATCAAACCATTTGTAACAACTGTGTTAAAGATCCACAAACGGTTGCCATAG

Transcript

Bpl_scaf_24314-4.13

GTTTTATATGATATTTAACAAATGATCCTACAGAGGGGGATTTTTATATACATGTACTGAAATGTAGTACATGTTTTCAATGTTTTAGCCTTTCAAACATATCTTCTTTATTAAATCCAGCCAAAATATTCATCTTTAATTTTGTTAGGTCCTGTCCATTATGTTGCATTCTGCATTTTTTTTAATATGATTTTGTTCTTATTGACCATATGTACTTGTAATGGGCATCTTAGAGATTAATTTTAAATAGACATTAGATATATTTAACACTTTCATTGTATATGTTGTTGTCAGTGTTGACTAAACTGCTTTGTTTATCTGTTACATTTTAGGGAATTGGGAGGGAGGATTTTAAAGATAGAGTCTCCTCGGGTGTCAGATTTAATGGAGTTTAGCAGTGGTGTACAGAGTGATGGTTTGCCAACATGGAGACAGGTTTTATCTGCAGGGGACCAGTTATTTGATTCTGATAATCTGCTAGAGAGAGTTAACAAAGAACCACAACTCCGTTTCGCTTTAATGGGAGATAAATCTGTCACCATCACACCATGTAATCCTGCACCATCATGTAAGAAGGTTACCGATTGGATGATTGGAAGACAAAAATATAAAAAAATACAATTCAATGGAAAAGAAACATGTGAAAAACAGGATGGCAAAGTTGATAAGAATATTGATAATACTGTAGAAATACACTGTGATAAACCCTGCAAACTTGTGAAACCAAACAACCTGTTGACAAATGTTAGCTTTAGTGAACCTTGTGATAAAAAACTGTCTTTTTCTGTATGTGATACTGACACGTTAACCAATCATAATGTTAAAAAGTCATGTGATACTTTCAAATCGACAAATCTAATTAATCATCACAATCTAGAAAATTCTGAAAATTTAAGCAATAGTCTCATCAATTCTACGAATGAACTGAGTGTAAATAGGTCAGTCTTGGAAGAAATCAACGATAATACCGATGAAGATGATATGATTGGTCCATCTCCCCCGGATTCTGCACAACCGATATCACAGTTGTGTCGAACTATTAGCGATAGACCCATAAAGAAACTTAAACTGTTTTCATCCCAACATAACGGTGAATTTACTCCATCATTATCCAATCACAGGTCTCGATTTATATCCCCATCACCGACGATATTGTGTAGCCAACGATCCGTTGTTGGAAAATCTCCCAGCCTTCACAGTACTCCTGTTACTAAAAATAGACATTGTGATTTGATATTGCCAGCCTGTACACCAATAAATCATTTGGACACACAGAAAGAATTTGTAACACCTAGACGTGTACCTTTGTCAAAGAAGACTTCAGTTGGCTCAGGGAAAGACATGAGAAAATCACTACAGCAATTTGCTACACCTGATCAGAAGAATAACATTTCTCAGATAGATGGTCCTACGCCAAAGAACTCGTTTGGATTTCAAATCAGTCAGCAAAATTTCCAGGATGCTAAAGCATTACATGAGGTTCAGAATTTGACTGTACTGAGTATGGAGTTATTAGCAGAGACAAGGGGAGACCACTTACCTGATCCAGAAGTAGATACTATCCAGGCTTTGTTTTACACAATACTAAATGATGTTCATCCTGACAAGGGTGCAAGGGAGACAACTGGAGTCATAATGGTGGACGCCAAGTCTGCAAAAAATCAAAAAGAGCAGGAAAAGTTACAAGGAAATTGTGACAACACATCATTACCTTCAAAAGATGCTTGTATATCACCCTCAACCCCATCATCAACGCCTGGTTCCCAAAAACCATCAACATCTAAAGATACAAGGCATTACACACCTATTAAGCCTTTAACTCCAGATTCTCAAAAACCATCTACATCTAAGGATTCTGGGAACAGGAAGTCATCCCCTTCTAGGTCAAGATCACCTAAACCATCAGCTCCTCCATCAAGGTCACCAAAGGTCAGCTCCTCATCTCCATCATCTAGTCAAGTACATTCCTCAGTACCTATTGAACAGACAATACTACAGAGATCTGGAGTGGATGGGAAGTTACAGGTCACTTATGTAGAGAAGGAAACAGATTTGTTCCAGTCTTTTATTGATCTTGTTATGAGGTATATTAATACAATATTTACAGATGGGATCCAGATATATTTGTTGGTTATGAAATACAGAAAGTATCATGGGGATATCTGTTACAACGAGCAGCTCAAGTTGGTATTAATTTGTGTTCCAAGATCTCAAGGATACCAGGTAACACTGAATATATATACCTTTGAGAATGTCATGTACCATGTACTACACCAGAGGGTACCTAAATACTCCTTCAGATCTCTTAATTCTTGGTACAATCATAGAACTCATCTTTACAGTGAATTTGCTAGAGTATTTGGTATAGAATTCTACCATGTTCTTTCTCGTGGATCTCAGTTTCGTGTTGAATCAATGATGTTGAGACTAGCTAAACCAATGAACTTCATCCCTGTCTCACCAAATGTCCACCAACGTGCCAGGATGAAAGCACCAGAATGTATACAACTGGTATTAGAACCAGAATCCAGGTTTTATCATGACCCAGTGGTTGTAGTAGATTTTCAATCACTTTATCCATCTATCATGATAGCCTACAACTATTGTTTTTCTACTTGTGTGGGGAGAATAGGACAACTGGAGAAAGCTCAGACTACTGGAAAGCTCAGTAAGTGTCTAGATCTTGCCATCATCATATTGTTTTTCTACTTGTGTGGGGAGAATAGGACTACTGGAGAAAGCTCAAAAATCAAAGATGATGTCACAGTTTCCCCAAATGGAGTTGTTTTTGTAAAACAGCATGTTAGAAAAGGAATTATATCAGCTATGGTAGAGGAAATACTGAACACAAGATTAATGGTGAAGAAGGCCATGAAGGAACATAAAAATGATAAGGTGGCAGACAGTATTGTTAGGAAAGCTAGAGAAACCTTAGAACGTTCCATCAAACTGGTTGAAGATACACCCAGATGGGGAGCTAAAGTTGTTTATGGAGACACAGATAGCATGTTTATCCAGCTGAAAGGGAGAAGTAAAGATGATGCTTTTAAGATTGGCTATGAGATTTGTGATGCTGTAACAGCCATGCATCCCAGTCCAATCAAACTGAAGTTTGAAAAGGTTTATTTACCTTGTGTGTTACAAACCAAGAAGAGATATGTAGGATTTAGTTATGAAACACCAGACCAGAAAGAACCAATATTTGATGCTAAAGGAATAGAAACAGTACGAAGAGATGCATGTCGTGCAGTGTCTAAAATTTTAGAAAGATCCATCAAAATTTTATTTACCACAAAGGATGTATCACAGGTGAAACAGTATGTACAGAACCAGTGTCGTAAGTTAATGGAGGGAAAAGTCAGCATGCTGGATCTGATCTTTGCCAAGGAGTACAGAGGAATGCCAGGGTATAAACAAGGGGCCTGTGTACCAGCTCTGGAAATATCCAGGAAGTTACTGAGATCAGACAGAAGATCAGAACCTTGTGTTGGAGAGAGAGTTCCATATGTGATTGTGTATGGAAGCCCAGGTCTACCACTAATACAACTAGTTAAACAACCATCTGAACTGTTGATTGATCCATCACTTAGGATTAATGCTACTTATTACATCACAAAACAGATATTACCTCCCTTGGGAAGGATGCTCTCACTGTTGGGTGTTGATGTATTCTCTTGGGTACAATTTCCCAATACTTTGCTGCCTCCAATTGTCCAATTTGTGACAAACCAACCAATCAAACCATTTGTAACAACTGTGTTAAAGATCCACAAACGGTTGCCATAGTACTTAATGACAGAATCAGGAAGTGGGAAACAGTTTTTCAACGTCTTGTGGAGATCTGTAATAGTTGTATGGGAACACAGGATGACAAACAACCGTGTACATCATTAGATTGTCCTATAATATACAGACGAAGTCTTGCTTCACGAGACAATCATAAGGGGACACAACTCAGGGAGGCTCTTGACAAGTGCTTAGATTTCTGATAAATTTTACTATGCAGACTAAGAATGGCATTTTGATATTCATATCATAGAAATACATTGATCCTGTGCAACAACTATCTACATATATATGTTATGAAGCTAACTTTTTGACCTGTTTTATACTATGCAGGAACAACAAAATTTTAGAATAACTAGACTGCTTTAGATTTCTAATATTCATGCATGGTACTGGTAAAAAAAAAAGAAGAAAATACATTCTTCCAAATTGAAGCTGAGGGGCTCAAATTATGGTACTTTCTGTTTTTTTCATATGTCCATTACATTTAGAAACATATGTCAATGACATTTAGAAACATATATCCATTACATTTAGAAACATATATGTCAATGACATTTAGAAACTATCTACAGTTGATGGTTTAAATTGATGGATTGTTTATGTTTAGTTAGTTGTTTTAATTGTAATTGAGTAGAAGGAGAGTACCCATAATACATCAGAGATATGTAGAAGGATACCATGACCAAACGACCAAAACTCATCATCCATCTTTGTTACTACGGTTGTCTCCCACCAAAAGCCACCTCTCTTGTCAGGCCAGATTTCAGATGCACTGAGATTTTGAAATATTACAAAGTTGTTCTCAAGAGATAACCTCTCTTATAAGGCCACTTTTTTATTGCAGAAGGAGTGGCCTTATAAGAAGGGGCTACTGTACTTCATGTTGTTTTTGATAATTTTATGATGTTTAATTGGAAAGGAGACATGACATGTGAGAGATCTTTATTTAATATTTTATAACAGTAAAGAACAGCGTTATTGGACAAAAAATTACAATACAGTGACACCTGCCATGAGAGAACACTCAATTTTCCTACTAAAGCTGTCATAAGTGACCTCACCTTCTACTTACAGGAACATGAGAGAACACTCAATTTTACAATTAATTTGTAATGTAGAGACCATACCGTCATCCACAAGAAAATGTATCAGATGTCCATGTTACATAATTAATAAAGAGATATGACATTTTACATTTGTCTTGCCAAATAGTTTGTCAGTTTTATTGGTGGAGGAAACTGGAATACCCGTAGGAAACCTCCGACCTGTTGCAAGTCACTGACAAAGTTTATCACATAATGTTGTCTCAAGTATACCTAGCCATGAACAGAGTTCGAACTCACAACTTTAGTGGTCATCCAAATGGATTGTATTTCATAAATACCTGTAATATACATGGACAACAGTTTATCTTGAGACTGAAATACAAATTAGAATTTTAAGGTTAAAAATGATGTATTTCTGGTATTATATGTATCCCTAATACAGACTGAACCATATATACTAAATTTTAATGCAGTTGTTATATAACATAATTTTTTCATTGGCTAATGTTTGCCATCAAATCTACACTGGAGTTGCTGTAACTAATGAATGAACTGTCATATTGAATTAATAAAATCCAACATGTCAATTAATACAATATGATAGAAAATAAAGACATAAAGAAATGGAGGCATACATGTGAAATAACTTTTAATGTTTACGTTCTAGCCCGAAAAATTTAATATGATTTTACTATTTTCTATGTTGTTTATGTGCCTTAGTCATTGATTCAAATTTTAGACCTTTTCTAAAGTTCCATTGATATATTTTTGTCTTGCATAAGAATAGAACTAACTGGATTGTATTTAAAGAATTGTCTGCGTCAGTCGGAGATTTGACAACAGCAACTAATTATCTTATTATACAGACATGAAGGAAAACTTTAAGGAGTACCTGGTACAATCTTATGATAACAATTAGTGCAATAATATGTTTTTCAGATGTAGATAATTCATACTGTTAAAACTTTATTTTTGTAATATTTTTGAAACATTTTTAGAAGGGTTTCAGATTGCTGTGAATTATTTAAACTTTCACAAAATTACAGTAAATTTATATTGTTTAGTAAACCCTATTGTTGCCAGGTCACATATTTTAGTTGAAATGTCTGTTTAAGTGTACTGTATTTTTTTTTAGAATTGTTTCATCAGGTTGAACTCGTGTGTTATGAAAGGTTAAATTTATTAATTAGTTGGTCATTGACTTATTGGTGAAGGTACTAAAAGGGATTTCAGTGCCTATTTTTATGGATGATCAGTATATAGTTTATGTTTAAAAAATTCCACTTACCATGCTGGTCTAGTACAAAACAGACATCATCGATATCGTCTCATAAAATATAACTTGTTCTCGTCATGATATAGCTAAAAAAATGCTCACTGGCTCACTCTGAAAATTCTGAAAGTTTCAGGATACAGTTAGAACATGTAAAACATTTCCTTTTTTGAATGGGGTGTAGATGGTTGCAGCTATTTTCATTGATTTTCAGTTATTTTATTTTCTATACAAAATCATACCTGTAATAGTTTGTGACAAAATTTGATATCTTTAGAGTGTTATTGGGATTAGATAAGTCCGTGTAGGGAACCTCTATATTTCTGTTTCACATAACTGCTCCTAAAGTGCTGGGTTGCAATTTGCAAAAAGTATATTTCTTTCCATTCCTGTAGTTTTAAAATGTGTATTTAATACTTTAAAGATGTACTGCTGTCTTTGTTAATGATTATTTATTTGTTTACATATCATGTTTTGTGATCAGGGACAATCATTAATATTTGCTCAGTGTCTGTGTATATGTTGATCATGAACATCGGCTGTAAATTTTTATAATAGGGGAAAATGTTGATATTCTTATTATTGTATAGTATTATATCTGTAAAGAATGGGGGATTTTGTGTATTTATAACACTGATTTTATATACTGTGTTTAGTATGTACATGGTTGTTGTATGTATTTTAAATGACTATGAATGCTAATTTTAATACATGTTTATTTAGAGATAAATGAATGATGGTTATGTAAGCAAGTTCTGATGTACAAGAATGCTAATTTTAATACATGTGTATATAGAGATAAATGAATGATGATTATGTACGCATGTTCTGATGCACAAGAATGCTAATTTTGTATATTATTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017964	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR030559	Family	DNA polymerase zeta catalytic subunit	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45812	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016035	Cellular Component	zeta DNA polymerase complex	Interproscan
GO:0019985	Biological Process	translesion synthesis	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02350	POLZ1, rev3; DNA polymerase zeta	EC:2.7.7.7	Fanconi anemia pathway	ko03460	PMID: 28812709
K02350	POLZ1, rev3; DNA polymerase zeta	EC:2.7.7.7	Platinum drug resistance	ko01524	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_24314-4.13 global RNA-seq network